Id Trinity | TRINITY_DN50430_c1_g1_i5 |
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Name Transcript | Ll_transcript_345585 |
Sequence | CATGTTATGATTGCTTCCTTACTTAACAGTATAGCTGTTTATATGTTTCGGTTTGGGATTGGCAATGACATGCCTTGTTATGTGCATTTTGATATTGATT AGCATTGAATGTGCATTTTGATGAATGTATATAGTTGTGTTTCATTTGGTAGAAATTCACCAAACTCAATTTTTGTTATGGCTTGACTAGCTGAGAAATC GGGCTAGGTTGCATTAGATCAAACCTGGAGTCTTGAAAACGGGAAAATTATTATGTGATCTATGAAGGGTTCATAAGGTTGGAAGGTTGTTCTATCATTT GACGAGCTTGTGATTTTTGGTAAGCACAGGCTTACAGGTTTAAATCCTAGATATGTCAGTCTCTTGGGGTTATCCTTGTGAATCTCTTGGGCCTGGCGTA GTTTGTCTACCTTTGACCGGATTGGACTCGTAATCTGACTTGGTCCCTAGCTGACCACAATATAGATAATTACAAAAACATTGATTATTTTATGGAGAGG TGGATCAGTTGTTTGTGAAATTGACTTTTCAATTAAATTCATTATTTTAATGGTTGATTAATCAGTCAAGGTGTTAAATCTCAATGTGGATCTTCCGATC TTATGGTATAAAGACTCAAGTTTGAGAGATCCACCTATTGAAAGACTTGTCATTGCAGAATAAATATATTTGGCTAGTTATTTCTGTGCCATGAAAGTTT TTGGAGGCGATGTGGAAACCGATAGTGGGGATCTGGATAATAACTACATGGCAGTATACAACCATGTGTTTCTGCAACTGGTTGGCATGCCCCATTAATG TCTTGCAGAGGAAATCAGGACAACATTGTGTTTACATGTTTATATTATTTATTTCGGTTTGATATTCATTGCACGTGCCCTTCATTTGAGGTTAGCTTTT CTAACAGTCTTTTCTGTTGTTGCTTTCCTTGGTATGTTGAATGGATCAGATCTATGGCTGCCTAGGAGTGAAAAGATGATCAATGACATGAAGTTATTAT CTTATGTTCCTTGTGTGTTCATGTGGTATGAGAATCTAGATTGGTGAAACTGAATAGATACTTAATTGGAAATAAATGAGCCACTAAATTGCACTGATCT CCCCTTCTAAACTCTCGTTTTAATTGACTTTTATTTTCCCGGGAATGCATATACTGGGAAAATTGAACAGGATGCACTTGTCTGATAAACATGTTCATCC AGGATGATTTGTAATTTTTGAAAGTAGAGGGTCCATTTTTTTATTAGTATTATTGTGCTTTCCTTGATTAGTTTGGATTGGAATGCTTAGCATATGTATT GCCCTAATAAAATTTCTTGCTTGTGGGTTCTGCTCTTTGTAACTTTTTTTGATCAGTTATTCTGTTAAATAAATTCTATAAAGGAAGGGAGGGAAGAACA TAGTAGAATGATGGGAGAAAAGATTGATCCATCTATAATTATATATTTTTTATGTAGATCTACAAATTTAGATTCATGGAGTCCTGAGCAACTAAAAACG ATGAGCTTTGGGGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACACGGTTGGACTGATGGTGGTAAAATAGAGGCCAAATATACATCAAGAGCTGCTG AATTATATAAACAAATACTTTCTAAGGAAGTATCTAAAAGTATGGCTGAGGAAGCAGGTTTAGCATCATCTGTTGTTGCTGTCCAGTCTCCACAAGTGGC TAATGGACTTCCTGAAGTTAGGACCAATGAGTTACCAAAAGAAAATAGTCTAGGGAAGCCTGAAACGCCTGAGAGCACTTCTTCACCTAGAGCTTCACAT ACAACATTTTCCAGTACTGTAAAAAAATCTATTGGTGCCAAAAAAACTGGGAAGACTGGGGGACTTGGTGCTCGGAAGCTTACTAAAAAGCCAAGTGAGT CTCTATATGAACAGAAGCCAGAAGAACCACCTGCTCCAGTTTCCTCCCCACCAAACAACAATTTGCCTACTGGACCATCACCACCATCTCGGTTTGGGTA TGTAGAAAATGTCCACTCATCTGATTCAAATTCTGGAGCGGGGGATACAAAAATGCCTGGTCATGTGTCTGTGCCGAAGTCATCAAGCTTCTTTGCAGAC TTTGGAATGGACAGTGGTTTTCCAAAGAAGACTCTGTCAAATTCCTCGAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTA AATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAATAAAGCTGGAGATTTGGCTGCTCAGGCTACTTTGTCCAAGTTTTCCGTATGTATCCTTTCTGT TAATAACTTGCTCGATCATTGTCTGAGTATACACATTTAGGTAGATCTTGGATGTTCAATACTGATTATGGGACTGCATCAGATTGCGTATTTAAGATCT CATAATTTTCTGGCTGTTAGAATTCATTAATTGATATCTCGTTTCAAATGAAATGCTGAGATTGAGAAGGAACAGTCACACTTTCGAACTAGTAGCCACT CACAAAAAATGCAATCAAATTCTAGACAAGCATTTATGTTGCTGGGATCACAAATTTATTTTTCATTTTATGTTTGTGGCCAGCTGTAATCTGTTTTATG TTCTGTGATAGTAGCCATGGAAAACTGTTATCTTGATAAGTACAAAACACCCCAAAAATTATTTCTGAAGGCTGAAGCAGACTCTGGAAAAAACTTTTAT TGTTCCAATTCCCTACACCATTCTAAAGTCATGTCTCTAAGTGAAAACTCATGTGTCGGTGTCTCGTTAATATGTTTTATTGATAAAAGCTTCTTAAATA TGTTTTCAATAATTAGCTTAGCTATTTTTCTTTATCATTATGATAATGTATGTAATTTAACTTATTATAGTTCTAAAAACCCATAATGATGTGGTAAAAC AGGTAATTTCCCATTTTAATGAATTGAGAAGGGTGAACTGTTTTCATGCTTTATGCAATAGCATTCTTATGTTTTATTGAAAACAACTTATGACTTGTCA CAAGCATGAACAACTTTTTTATTAGAAATTTTTATAACCCTGTAACGGGGTTGTTTTAAGGTTGATGTTTTGACAGAATTCTTCCTTTTGTTATTTCAAG GGTAAAACTGCCATCTCCAGTGCTGATCTTTTTGGTGATTCAGACTCTTCCATTGATCTTGCTGCTAGTGACCTCATCAATCGGATATCATTCCAGGTAT GCCTTTGGATTTAGAATCTTCATTGTTAATGTCCTCAATCACGTTGCCCATGACCTATGAAGCACAGACACTGCAAAATAGTAGTTGTGTCCCTGTCTCC GTGTCAGACTCATATTCATATATGACACTTCCGTACTATATACTCTACAACTTTCTACGTTTTGTTTTTGAATTTATACTGTTATGGATGGAAACGGCAC AATAAATAAAACAATTCTTACATTTTATTATATTTACAATAACTCATGCCAGCTTTTAAACATTATTCCTCTCGTAGCTGTGTCATGTTTTATAATTTTT AAAAATTTGCCGGATCCTCTTGTCCATGTCGTATTATGTAAGTGTCCGGTGTTGTATCTGTGCTTCCTAGCTCATACCCTCCGGCCTCTGCCGTCTTTTA TCTCTTGTTTTTCAGGCACAAGAAGATATCTCTTCCCTCAGAAACATTGCTGGAGAGACTGGGAAGAGACTCAGCTCCTTGGCTTCCACTTTGATAACAG ATCTTCAAGATCGAATACTCTAACATTGTATGCTTTGTATCAAAGAAAATCCTTGGAGAAACAGCCACTTTTGTTTTTGAATGTAATAGAAGATTGTGCA GCATATGATTCTTTGAGAAACAGATAGAAGGTGCTATTAATTTTGAGACGTGGCTAGTGTTTATATTTTGTATGGCTTGAATTATTATGACGTTGCTAAT GTGTCATAAAATGCTGTTTCGCTTAGTCAGGCTTATGCCAGTTTGTAACGAACATAACATTGTCTTGTATCAATTTGAAAATTAGAGACCTTTACGTTTT TCACTTAAA BLAST |
Tissue | pods |
Gene name | LI_gene_177180; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_345585
Blastp | Probable ADP-ribosylation factor GTPase-activating protein AGD8 from Arabidopsis with 63.41% of identity |
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Blastx | Probable ADP-ribosylation factor GTPase-activating protein AGD8 from Arabidopsis with 60.21% of identity |
Eggnog | domain, ankyrin repeat and PH domain(COG5347) |
Kegg | Link to kegg annotations (AT4G17890) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019421354.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |