| Id Trinity | TRINITY_DN50448_c1_g1_i22 |
|---|---|
| Name Transcript | Ll_transcript_345274 |
| Sequence | GAGTGCGATTTCCAGGTTTAACACACCCAGGGATAATTGGAACTGCACCATCAATGGAACTCTTGAATATATGGAATGAAAGGGAGAAAGATGTTGAAGA AAATGGTATTGAATCTTTTAAGTTGTGTGAGGTTTTGCATTCACGACCTTTGGCAAACTTACCATCTACAAACGGTTGTCACCTTGGAAAGATTTCCAAC AAAATTGGTATCAGAGCTACAACAATCCAAGGGGCTGTGGGCTGTGGGTGATCAAGCAAAAGGCAAGCAGAAATTCAAGTCAGATTCACTGTGTGTGAAG ACAAGAAAATTCTCTGCAACAATGGGAAGTGGAAGCACAAACATTCCATCCATGGGGCTGCCAATGCTCACGGATAAAAACTGGGAAAGATGGATGACAC AAATGAAAGTGTTGTTCAAATTTCAAGAGGTAAAGGTGGTAGTTGAAGAAGGTGTTCCTCCACTGGTTCACACAGCATCTGAGAGCCAAAGAGTGATGCA CAATGAGGCTCAACAAAAGGATAACAAGGCATTGTTTCTAATTCACCAATGTGTGGATGACAACCATTTTGGCAAAATTCAGCATGCTAACACAGCCAAA GAAGCATGGGACATACTCATGCTAAGTCATGAAGGAGGAAACAAAGTAAGAAAGGTAAAACTGCAAACTCTAAGAAAACAGTATGAGAATTTGCACATGG AGGAGGGTGATAGAATTGGTGAATACTTCACCAAGATCTTGAACACAGCAAACCAGATGAAGAGCTATGGAGAACCAATCACAGACTTGATGATCATTGA AAAAATAATGAGATCATTGACTCCAAGATTTGACTTCATAGTAGTGGCCATAGAAGAATCAAAAGAGATTGAGGCAATGAAAATTGGAGAGCTTCAAAGT TCATTAGAAGCTCATGAATTCAGAGTTCTTGAAAGACATTCAGGCAAGAAATCAGAACAAGCTTTGAAATCAATTCACTTCAAGAATGAAGAGAAGAAGA AAGAAAGGAAGTGGAAAGGAAAGCAAGAAAGCAAAAGATGGCCACAAAGACAGACTCAAGATGAGCCTGAGTCTTCAAACAGAATGAGCAAGAACAGACT GAATGCAAGGAGAGTAGATAAGAAGAAGGTGGAATGCTTCAGATGCCACAAGTTAGGACACTATTCCTATGAGTGCACTAATGAGAAAGCAAAACATGAG TCAAACAGTGCTGAAGCATATGCAGCACAAGAAGGATCAGACTCAGAACCATTGAGTCTAATGGTAACAACATCAGCAGAAGATGCAGAAGCAATCAATG AGACATGGTATTTGGACTCTGGATGTTCAAATCACATGACAAAGAACAAAGAGTGGCTGATGGACTTTGATCCTTCTAAGAAGAGCAGGGTGAAATTTGC AGATGATAGCTCATTGCAAGTGGAAGGTGCAGGGAATGTACTGATTACAAGAAGCAATGGATCAAAGGCAGTGATCAATAATGTCCTGCTTGTTCCTCAG ATGAAATGCAATCTACTAAGCATAGGACAATTGGTAGAGAAGGGATACTCAGTATTGATGAAAGATGGACAGCTAGAACTATCTGATATCAACAACAAAT TGATACTCAGAAGTAAACTGACCAAGAACAGAACATTCCAAATCAACCTCAAGGCTGCTGAGATACAATGTTTGGCTACCATGGAGAATAGAGAAGAAAG TTGGCTGTGGCACTCAAGGTATGGTCACTTAAACTTCAAGAGTCTTTCTCAATTAGGCTCTAAACATATGGTTAGTGGAATGCCTATTACTGCACTACCA GAAAAGGTGTGTGAAGTGTGTTTGATAGGTAAGCAAACAAGGAAGCCATTTAAAGCTGAAATTGCAATGAGATCCAAAGGTCTACTGGATGTGGTACACT CAGATGTGTGTGGACCATTTGAGACTCCATCCTTGGCAGGGAACAAATACTTCATCATATTTGTAGATGAGTATAGCAGGATGGTCTGGTTGGATGTTCT GAAAGCCAAGAGTGATGCATTTGCAGCCTTTCAATTCTTCAAAGCTGAGGCAGAAAAGGAGAGTGATAGACAATTGAGAATCCTCAGGACTGATGGAGGA GGAGAATACACCTCAATTGCTTTTGAAACCTACTGCAAACAGCAAGGGATCAAGCATGAAGTGACTGCACCTTACACACCTCAACATAATGGTTTAGCAG AAAGAAGGAATAGAACCATTATGGACATGGCAAGAAGTCTAATCAAACAGAAACACTTGCCTCAGAAATTATGGGCAGAAGCAGTATCCACTTCAGTGTA CATATTGAATAGAAGCCCTACAAAGAAGCTTGAAGGGAAGGTTCCAATTGAAGCTTGGACAGGAAGAAAACCATTGGTAAGTCACTTCAAAGTCTTTGGC TCACTTGCTTTTAAACATGTTCCAGATCAGAAGAGAACCAAGCTGCAAGACAAGAGTGAAGCAATGATTTTCATAGGATACCATCCAACTGGAGCATACA AATTGTATGATCCAGTTAAAGAAAGAGTCCAATTCAGTAGGGATGTATTGATCCTGGAAGATGAAGAATGGAACTGGAAGCAAAATCAAACCAGTTTGAA GAGAATGTCAACAGAAGCACTTGATCAATTAGATGCAGCAAACAAAACATCTATCAGAGAAGACTCAAGTGAGACAAGAATCAGTCCTCCAACACTCCAA AGATCTCAGAGAACAAGGAACATGCCAAGAAGGTTCAATGACTTTGAGGTGCACACTGATAATCAGATCAATGAAGAAGGAGAACTGATTCACTTAGCAT TGATGGCTGAGGCTAATCCTATTGATGAAGCAGAAGCACTAACTCAACCAGTATGGAGAGATGCTATGATTGAGGAAATTAGATCCATAGAAAAGAACAA AACATGGGATCTAGTTGAACTTCCAGCAAACAAGCATCAGATTGGAGTCAAATGGATATTCAAACAAAAACTTAATCCAGATGGCTCCATCTCAAGACAC AAGGCAAGACTTGTAGCAAAGGGATTCTTGCAGAAATCTGGTTTGGATTACAATGAGGTGTTTGCTCCAGTAGCTAGGATAGAAACCATAAGAATGGTGG TTTCTATTGCTTGTGCAAAAGACTGGCCTATCTTCCAATTGGATGTAAAGTCAGCATTCTTACATGGACCATTGATGGAAGAAGTATATGTAGAACAGCC TCCTGGATTCAGAATTCAGAATAAAGAGAATCATGTGTATAAACTCAACAAGGCATTGTATGGATTGAAGCAAGCACCAAGGGCTTGGAATAGAAGAATA GACTCATTTCTATTCAAACTGAATTTTCATAAATGCATTGTTGAACATGGGCTGTATATCAAAGAAGGTAGTGATGAAGTATTAATCATTTGTCTCTATG TAGATGATTTACTTGTCACTGGTTCAAGTGAAAGAAGAATTGAAGAATTCAAGAGAATGATGAATGCTGAGTTTGAAATGACAGATTTGGGAAAATTGAG TTACTTTTTGGGCATGGAATTCTCCTATATGGCAGCAGGGATTGTAATGCATCAATCCAAGTATGCAAAGGAAGTCTTGAAGAGATTCAGTATGGAAACA TGCAATCCAGTAACTAGTCCAGTTGAAGTAAGCTTGAAGCTTACCAAAGATGAAGAAGGTGAAGCTGTAGATGAAACCATCTTCAAACAAATGGTAGGTT CTCTAAGATACCTATGCAACAGCAGGCCTGAATTATCCTATGGAGTTGGATTGATTAGTAGGTTCATGTGTCAACCAAAAAAGACACATCTACTAGCAGC CAAAAGGGTATTGAGATATGTTCAAGGCACTTATGATCATGGTATTCTGTTTAGAACACAAAAACAGAAGCTGGAACTGGAATTAGAAGGCTATGCAGAT TCAGACTATGGAGGAGACTTGGTAGAAAGGAAGAGCACCTCTGGTTACTTGTTCTTGCTTAACAAATCTCCTATCTCATGGTGCTCTTGCAAGCAAAAGG TGGTTGCTCTATCCAGTTGTGAAGCAGAATATATTTCTGCTTGCTATGCAGCCTGCCAAGCAATCTGGTTAGAAGAGTTGTTGGCAGAGATGAGGATGAA GACAAGTTCACTGGAATTAAAGCTGGACAATATTTCAGCTATCAATTTGGCAAAAAATCCAGTAAGTCATGGAAGGAGTAAGCACATTGAAGTAAGATTT CATTATCTTAGAGAGTTGGTTAGCAAAGAGAAGCTCAAATTGGTATATTGCAGAACAGATGATCAACTTGCAGATCTGTTCACAAAACCATTAAAACCAG AACGGTTTGAGAACTTGAAGAAGGAAATTGGAGTTGTTTCTCTTAAGAACATGAATTAAGGAAGAGTATTGAAAGTAGGATAATTCATAATCTTAGGAGT TGAGTAGTTTGTGATTTAACACATGTGTTTAATGTGTTTAGAATGTAAATTGTAAAACTTACTATATGTGGTAAGATTTTAAAAATCTGTTTTGGTAGTT AGTTGTAAAGTTTCTATAAATAGAAACTGATGTATTCTTGTTGAATAAGCAATTACACATTACCAACAATCTCTTCTTTTTCTTCTGCAATAAGCTTTCT GCATTTCCATTCTTTGTTCAAGATTTCCAACATGGCAAACAGCATTGCAGCCACATCGGCAATATTTTCACACAAATTTGTGCAATTATGGTAACTGCAA CATTCCCAAATTAAAACAATGTTCCAAAGGCTAAATCCACTTCACCATAGTGAAGGCTTCAATCTTAGAATACACTATTTAAGTATGTAAGACTTTGCCA AATAAACTATTACAGCTGCCAAGTTTGCAAAAGCTAATAAGGATTTCACCAACGTTTTGTTGGCTTGCTAAGAAACATAATAAAACTTTGTGTTCTAGCT GAGAGAAAGATCACCGTCCTGGACGGTGCTAACCTCTTTAATCACCTTTCTTAATGTGACATTGTTGTAGATTCAAAAAGGCACTGCTGAATGGGAGAAG ATAGCAAAAGAAGCAGCAAGAACAATACCAGGAAGAGAAAATGGTGGAAATTGTGACATAAAAAATCTCAGTAGAGGTTCAAAGATATACCTTCCAGTTT TTGTAGAAGGAGCAAATCTCAGCACTGGTGACATGCACTTTTCACAGGGTGATGGCGAAGTCTCATTTTGTGGTGCAATAGAGATGAGTGGTTTTCTGGA ACTTAAGTGTGAAATTATAAGGGGTGGAATGAAAGAGTACCTTACACCAATGGGACCTACTCCTCTTCATGTCAACCCAATATTTGAGATTGGCCCTGTT GAACCAAGATTCTCAGAGTGGTTGGTTTTTGAAGGTATTAGTGTTGATGAAAGTGGGAGGCAACATTACCTAGATGCAAGTGTTGCTTACAAGAGAGCAG TACTCAATGCCATTGACTACCTCTCTAAGTTTGGGTACTCCAAAGAACAGGTTTAAGTACATATATTGTTTCAAGATTGTAGTTACAGCGCCGCAACCGG ATGATATTGTAATTACGATTTGAGTCACGTCAGACCATACGAAATTCAAAACAATTATGATTTGAACCAAATTTGATTGCATGTTTTGAGCAGTTATAAG CTAATGCAACCGATGTTGCCATAGTTCTGGTCACGATATGATTTCCGCGACACCAAAATTTTGAAATATTTGCATCTCACATTTTAGAGGAGCTAAACCC AAAATAAAACTTATGACTTATTGTTACATTTTGAACTTCAGGTGTACCTCTTACTCTCTTGTTGTCCTTGTGAAGGAAGAATATCTGGAATAGTGGATGC TCCCAATGCTGTTGCAACCCTGGCCATCCCAATAGCCATATTTGACCAGGACATCCGTCCTAAAAATAACAAGGTTCCAGTTGGACCCCGCCTTATAAAG AAACCAGATGTCCTCAAATGCACTTATGATGGAAACCTACCTATTACAAGGAACCCTAGTGCTACACAATGACATGGACAAGTAAGAATGCAGAATGAAC TTACAATGGATTTTATGGGACAAAGGCTTTTAAATAATGGAGAAGTTTGTGATATATTCACAGTTGTAGAAAAATATGGGACAATATGCTTCTTCTCACT GGAAAAATGTTTGCTTTCATGTATGCTCAATTATTCAAATATACTATTAAGGAATAAGGAATTCAAACTAGCACAGCACTACTACTATTTCGAAGAGCTA GAATCATCTTTATTAATCAATAGAGAAATATTATGTAAAACAAAGTAAAAATCACAGTGAAATAATAATTGTATCATTTCATTTATAACTGCAGCCACAT TTTTATCTTTAAAATAAATATATAAATAGTATTTCTCTCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_177278; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_345274
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.5% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 34.01% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0000428) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020987654.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14223.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |