| Id Trinity | TRINITY_DN50471_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_345985 |
| Sequence | CTGTTAATACTATTAGATTTAGTCCCAGACCTAGTGCTGTATACCAGCTGCTATCGTCATCAGATGATGGAACTTGTAGATTATGGGATGCAAGATATTC ACAACGGAATCCACGAATATACCTGCCTAAACCTCCAGAGGCTACAACTGGGAAAAGCAATGCTCCACCAGCTAATCAACCTTCCTCAAGTAATGGTCAG CAAAGTTGTCGGATACTTTGTTGTGCATATAATGCAACTGGAACTGCTTTTGTTACCGGAAGCTCTGATACTTTTGCCAGGGTGTGGAGTGTTTTTAATT TTAAGCCCAACTCTGACGAGTCTGAACAACCTATACACGAGATCGATTTATTAACTGGTCATGAGAATGATGTCAATCATGTACAGTTTAGTGGTTGCTC TGTGGCTTCAAAATTTTTGACGTCCGACTCTTGGAAAGAAGAAAATACCATGAAGTTCCGAAATTCCTGGTTTAGTCATGATAACATAGTTACTTGTTCT CGTGATGGAAGTGCAATTATATGGGTTCCTAGATCTCGTAGATCCCATGGAAAAGCTTTACACTGGACTCGTGCATATCATCTAAAGATGCCACCACCAC CTTTGCCTCCTCAGCCTCCTAGAGGGGGTCCAAGGCAGAGATTTCTACGTACTCCCCGTGGTGTCAACATGATTGTTTGGAGTCTGGACAATCGCTTTGT ACTTGCAGCTATCATGGGTAATGTACTAGCTAAAAGTAGGAGCTGTAATGGGTTAGGGAAGTGTACACCTTAAGTAAGATATTATTTTTGTTTTGGTATA TTTGCATATTAAAATGATGGAACCTTTATCGATATCAGTCAAGGTGGTACGTAGATGTATTTATATATTCGGACTCTTACAATTTGATCCTCTCCTGTTT ATCCACATGATATGTTCCTTATCCTTTGAGCATCTATCTTGTAGTAATTCACTCATTTTGTTGAAGATTTTCTAGTGGTGTTAATTACCAACCATTTCCT TTGATAGCTTGCTGGAAAGACCTAATATTGAATTATTATTCAAAGGGCCGAATTTGTCTGATATTTATATGTTCTACTAACTTTAAAGATGTGTGTGAAT ATTTATATGTTCTACTAACTTTGTACTACTGATTGCTGCTGTTAGTTAGTTGCATACAATGTATTTTATTGCCTTAACATGGGTGCATGCTTATAATATG CAACTGACATTGTATTCCCATATGGAGTAGAAAATACAGTAGGTATCACATCAACTTTATATTCTTCTGATCATTGTTATGATGATGCATATTTATTCAT TTGACTAGGTGTGCATTCACAACTTTGTGATCTCCTCCTTTTCTTCCATAAATAATCAGTTGTTATGTTATTTCATAGCTTAAACTGAATACTTGTCTTT GTCATCTTGAAGATTGCAGAATATGTGTTTGGAATGCAGTTGATGGAAGCTTAGTGCATTCTTTGACTGGTCATACTGCATCTTCTTATGTTTTGGATGT TCATCCTTTCAATCCTCGTATAGCTATGAGTGCTGGGTATGATGGACGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_177443; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_345985
| Blastp | Lissencephaly-1 homolog 1 from Paramecium with 25.44% of identity |
|---|---|
| Blastx | PH-interacting protein from Mus with 43.4% of identity |
| Eggnog | Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein- mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for(ENOG410XP3K) |
| Kegg | Link to kegg annotations (GSPATT00015130001) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441308.1) |
| Pfam | WD domain, G-beta repeat (PF00400.31) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |