Ll_transcript_345627

• Id Trinity: TRINITY_DN50480_c0_g1_i20
• Name Transcript: Ll_transcript_345627
• Sequence: ATTTTCTCTCTTATAAAATAATCCAAAAATAAAAAGAGAAAGGTAAAATAAAAAAAGAATTAAATATTTAAATGATGGATAGCCAGTAACACGGAACGGT ATGATTGGAGAGAGTATTAATATAATTAATGTTCGGTGTTGATATTTAAAAAGGTGGGTGACCAATCCAAACCTAATCGTGGAGTCAACATAGCCAGCGT AGTAAGACACTAATACTTATTCTGTTTCTAGTCTCTCGTTTTCAAATCAAATCAAATTGTAGGTTGCGATGGCAGAGAAGAAATACATCATTGAAGTTGA GAAAGCCAAAGAAGGTAGCGATGGTAAACCTTCTATGGGACCAGTTTATCGCAGTCTCTTCGCCAAACATGGTTTCCCTTCTCCTATTCAAGGTCTCGAT TCTTGTTGGGATGTTTTTCGATTATCTGTTGAGAAATATCCAAATAATCCAATGCTTGGTCGCCGTGAAATTGTGGATGGGAAGCCTGGCAAGTACATCT GGCAGAGTTACAAAGAAGTATATGACGTGGTGGTGAAAGTTGGGAATTCTATCCGCAGCTGTGGTTATGAACAGGGTGTAAAATGCGGTATTTATGGTTC CAATTCTGCAGAGTGGATTATAAGCATGGAGGCCTGTAATGCTCATGGACTTTACTGTGTTCCTTTATATGATACCTTAGGTGCTGGGGCAGTAGAGTTT ATTATAGCCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCCGAGTTATTGAAGACATTTCCAAATGCTGCAAAGTATCTCCGGAGTT AGTTTTGTTGGACTTCCTTTCTCTTTCCTAAATTGAAGTGCATTAGGAAGAAGCAATAACTTTTTTTTTAACTTTGGGCAGCACTGGTGAGTTTTGGAAA GGTTACCCCAGAACAAAAGCAAGAGGTTGAAAAGTATGGGTTGACAATATATTCATGGGATGATTTTTTACTATTGGGTCAAGATCAGAGTTTTGATCTT CCTGTGAAGAAAAGGAGCGACATCTCTACAATAATGTATACTAGTGGAACTACCGGTGACCCCAAGGGTGTCTTAATATCGAACGAGAGTATTATTACTC TCTTAGCTGGGATTAAACGACTGCTGGAGAGTGTCAATGAAGAATTAGAGGTGAAGGACGTATACCTATCATACCTTCCTCTTGCACATATCTTTGATAG AGTCATTGAGGAGGCATTCATATGGCATGGTGCCTCAATAGGTTTCTGGCGAGGGGATGTCAAATTGTTAATTGAAGACCTTGGAGAGCTAAAACCAACT ATTTTCTGTGCGGTTCCCCGTGTGCTTGATAGAGTGTACTCAGGTTTGACACAGAAGATTTCTGGTGGGGGCTTCCTAAAACAAACATTATTCAACTTTG CTCACTCATTTAAGTTGAATAACATGAAGAAAGGGCATCCTCATGCCGAGGCATCTCCATTTTTTGACAAACTTGTGTTTGATAAGATAAAGCAAGGATT AGGGGGTAAGGTACGCCTTATTTTGTCTGGAGCAGCACCTCTATCTACACATGTGGAATCTTACTTACGGGTGGTGACTTGTTCTCATGTCCTTCAAGGA TATGGTCTGACTGAAACTTGTGCGGGAACCTTTGTCTCCCTACCAAATGAACTGGGCATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGTGGATGTCT GCCTTGAATCTGTTCCTGAAATGGGATACGATGCCCTTGGTAGCACACCAAGAGGAGAAATCTGTGTAAGGGGAAATACCTTGTTCTCAGGTTACTACAA ACGTGAAGACCTCACAAAAGAGGTTCTGATTGATGGATGGTTCCATACAGGGGATATTGGAGAATGGCAACCTAATGGAAGTATGAAAATTATTGATCGG AAGAAGAATATATTTAAGCTCTCACAAGGAGAATATGTTGCTGTTGAAAACCTGGAGAATATTTATGATCAACTTTCTTCTATTGAATCTGTATGTCCTA AGAACCCTTTCAATGGTTTTGCCATCCTAGTTTGTGGTGCATTTTTTGCCTATAAGAAGTTTGGAAAATATATGGTAAATTATCTGTTGGTCATATAAAA GGGAAAATGTGTGCAGAAAGTGTTGCTCAAACTACTCAAGCTTATGAGCTCGATAGTTCACACGATAGAATGACACAAAATGTGCCCTGGATGAGCTTGA GACAAGGTGGCCAATCTTGATCATCTAAATCTTTAGCCTCTGCTTGGGTTATTTTATTATGAAGTTCACAGTAAACCAGACTGATCCCTAGTGTCAGTTT ATGGTGACACTCCTACTTTTAAGGCTTGAACATCTTTCTTTCATGCTTACACATATCCAAGTTGCATTAGTTTAAAGAAATGAAGTTTTAGTTTCGGCTT CCTTTCATGACCCAAAAACTTGTCTCGTGCTGATTTAAACTTATTTTTTCCTGTCTCAGATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTTGC TGTTGCTAACCCCAGGAAGGAAGCACTTGAACATTGGGCCGCAGAAAATGGGATAAGCATGGACTTCAGTTCACTCTGTGAAGATTCTAGAGCAAAAAAA TACCTACTTGAAGAGCTTTCAAAGATTGCAAAGGAAAATAAGTTGAAAGGTTTTGAGGTTATAAAAGCAATTCATCTTGACCCGGTTCCCTTTGATATGG AACGTGACCTTATCACTCCAACATATAAGAAGAAGAGGCCTCAATTGCTTAAATACTACCAGAATGTCATTGACAACATGTACAAGAGTGGAAGCAAACC CATTGCTTGAGATAAATTTTGAGAGCTAATGCCATGTTGATAATTTACTTACAGCATGAGGTTGTACTTGTTTCTGTTAATTTATTTCCTTTTGGTGACT GTATATATAAGTAATTCAGTGAGAGCAGATAATGTCATGCATAGCTTCTGCTTGATCGTGGAAGATATGAAAATATGCTTACTGTAAACTGGAGTTTATT TGAACAAATCTTTGGATCGATACGTTATTGCTTGAAGAAACACATAGGGAAAACGACATGTTACTTATGGATTATTATGATAATTTTATTTTCTCATATT TCTAGACACTGCAATTATTTTTAATATCGGAGAATTTGTATTTTGCATTTTTGCCCAGTTATTATTTTCAGGAGAAGGATATTATTAGAATAAAGGCCAT TGTCTTTGTAAAGAAAAGGACTTAGTAAAAAATGCACCTCGGCCTCTGACTGTAAAATCGTTTATGAATGCACTATACCTTGCTCATGCGATGGTGGGTT TCATTATATTACCAAGTGGAATAACTAGATCACCTTCTAGGAAGGGTACCATATAATAACTCTTATTGTACCTCCCCG
• Tissue: pods
• Gene name: LI_gene_177506;
• Additional information: details;

Expression of Ll_transcript_345627

FPKM

• PAB: 0.3
• PNAB: 1
• PS1: 0.2
• PS2: 0
• PS3: 0
• PW1: 0.6
• PW2: 0.6
• PW3: 1.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_345627

• Blastp: Long chain acyl-CoA synthetase 4 from Arabidopsis with 78.81% of identity
• Blastx: Long chain acyl-CoA synthetase 4 from Arabidopsis with 72.62% of identity
• Eggnog: Amp-dependent synthetase and ligase(COG1022)
• Kegg: Link to kegg annotations (AT4G23850)
• CantataDB: Link to cantataDB annotations (CNT0000270)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019420966.1)
• Pfam: AMP-binding enzyme (PF00501.27)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;