Id Trinity | TRINITY_DN50484_c0_g1_i10 |
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Name Transcript | Ll_transcript_346919 |
Sequence | CAAGTAGTGAAGAAATAAAAGGACCTTATTCACCTTACACACATCATCGTGAATGAAAGGCCAACCGTCGAGTCTTACATTAATTATTAACGAAATTAGT TATCGCCGCCACCATTCAGCATCCGGTAGTTTCAATCCCCCAAATCGACACGTGTCAGTTGCATCCTCATTTCCTTGCACCTACACACTTCTTTTTTCTT CATTTTCTCCAAACTTATGGCACATCATAATATAACCATGATGATTAAAACATAGTATATACTTAATTATTCCAAACTCTCTCATTTCATATTCTATCCA CTATTTAATATTTACTGTTCATAATTATTAATTATGTAATATTTAGGTACACGTGGTATTTACTATTATATGTTATTCCTAAGTTTCAATGGTTCCTGCA AAACCCTAGCCACCTTCCTTTTGTTCATACATGAACCCCATCTGAATTTTGCTCGCAAAGCAATGCTTTTATGCCAGAGATTCCTCCAAAGTTTCAAGTT TACATGGTTCATGAGTTGTTCTGAGCACAATTGATTTTGTGGTTGTTGGTCGAAGGGGATTTGAAATTGGAAAATCGTTCAGCTGGGTGCAGGTTGGTTG AAGGGGTAGTGCCTTTTGCGTCGCAGATGGGTGAAGACAGCTTTCGTGTTGGCGGGTTTTCAGCTGGTCTGGCTGTGATCTTGAAAGATGAGGAGAGAAA GGAAAATTCACGACTTCTTTCTTGTTGTGATGATTCAAGTCACCAATCTGTGGAGCGAACCCTCGAATACGTGTTTGCCCTTCCCAATAGATCACTCAAT CCAGTGACTGGTTCAATTGACAGCAAATTTATTCGCTCTGTCATTAGGAATGATTTCTCTAAGTTTAATTCGAAATCCAGTGATTCATATGATCAAAGAG ATGGAACTTTTGTTAGAGGTGGTTGTGGAAATAATGTTGTAGGCCTGGAAAGTTCCAGTATCCGCGGTGATATTGGAATTGTGAAGCAGCGCCCATTGCT TGTAGAGAGCATGTCAAATTTCAGTAGTGTGAGGGCCAACACTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTGTGTTAGAGACATCAGGTATACAG CAGCTCGGTTGGGCTACTCTTTATTGCCCTTTCACCGATGATAGAGGTGTTGGTGATGCTGATGATTCATATGCATACGATGGGAGGAGAGTTAGCAAGT GGAACAAGGATTCCGAGAAGTATGGCCAGTCATGGTTTGTTGGTGATGTCATTGGATGTTGCATAGATTTAGATCGCGATGAAATTCTATTCTTCAGGAA TGGTAATTCACTTGGGGTGGCATTTCGGGGGATTCGAAAAATGGCTCCTCCTTTGGGATATTATCCAGCAATTTCTCTCTGCCACGGTGAAAGATGTCAA TTGAACTTTGGGGCTCGTCCCTTTAAGTATCCAATTGACGGTTATTTTCCTCTCCAGGCTCCTCCATCTAAGAGCTATTATGTCACCCAGTTGCTGCAAT GCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGGGCTGAGTATTCTTTAGTCCAAAAGTTGAGAAGAGTGAAGAGATGCCAGGAGCCAAGAGTATA TGGTTTGGGGTCCTTTGTTGTCTTTCATGTTTGAAGTTTTTGGATTGCATGAACCCCATGATTATTCAAGCTTGGATCAAGTTGTTGATATGCTGCTACG ATTTAAGGGATCACATTTGCTGTTTGAGCACATCATAAATGCCCTTTCCTGTGGTTGTAAAGTAGCCCCATTTGTTCTAACTGAATGTCCATACTCTGGG TCATATTCCCACCTTGCATTGACATGTCACCTACTTAGACGAGAAGAACTTATGGTGCTTTGGTGGAAGTCACCATATTTTGAATTCATGTTTGAAGGTT TTCTGTCACAAAAGAATCCAAACAAAGAGGATCTGGAGTCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGCAACTTATGAAGCTAACAT GATGTTGACAACTACAGCTCTATCTGAAACAATCAGCAAGATCGAGGAGAAGCACAGGGATCTTTGCCGCTTAGTGATACAATTTATACCACCTTCAACA TCTCCCCAGTTGCCTGGGGCAGTGTTTAGGGCATTTTTACGAAACTTTCTACTGAAGAACGGAGGAGCAGACCGAGATATCCCACCCCCTGGAGTTTCTA GTAACTCAGTTTTTGTTTCAATTTACACAGTTGTACTTCATTTTTTATCTGAAGGATTTGACTTGGGTGACATCTGTGGCTGTTCAGAGAGCTGCAAAGC AGGCTTACTTCATAGAGGTGGTCTACGAAGTTTTCCTGTAAGGTTGTTTCTGAAAAACGATTCTCTTGGAACTGATATTCCCAGGCTTGGAGGCTCCTAT GCTCGTTTATCAAAGCTACACCCTATACTTCATCATGAAATGGAAGTGATTCAATGGTATGAAGGCTGCATGGATGATGTAGAAACCAGAGTTACGCATT CAACCAGGCAGAAGCCATGCTGTTGCTCTAGTTATGACTCTGATTTTGCAGGAAACTTGAAGAATCCAGTCAAATACAGGGCCAAGGGTTCTCGCAGCCA TTGTAGCTCTATTCCAGAAAGATCTGCTCATGTAACTCCTGAATGCATTGATAGGAGTTTGGAAGATGAGATAACAAATAAACCTAGCTCCAGTGATCAA TCTGAACCTAGTTGTGGTCATCACCAGGTGCATCATATGAAGACTTTACCTAAGGATAGTGCTTTGTCTAAAGCTACACTACTAGAAGAAGAGCTACTTG ACGTCTTACTGTGGTTGTATAAATATGGTCTTGCATCAAATTTCAAGAATGCATCATACTACATGACTCATCAGGCACAGACAATCTTGTGTTTGGAGGA AACTGATAAGCAAATAAGAGAAAGATCTTGTAGCGAGAAATTGAAGCATTTGAAAGAATCTCGGAATGAATATAGAGAGCAGGTTATTGATTGTGTCAGG CGTTGTGCTTGGTATCGTGTATCTTTATTTGCACGATGGAAGCAGAGAGGAATGTTTGCCATGTGCATGTGGGTGGTCCAGATGCTTCTAATTCTGAGCA ATATGGATTCGGTGTTTATCTATGTCCCTGAATACTATTTGGAAGCTCTGGTTGATTGCTTTCATGTGTTGAGGAAAAGTGATCCACCATTTGTTCCATC CACATTTTTCATCAAGCAAGGACTTACTTCATTTGTATGTGTCATATTTCAACCTTTATTTCTCCACTTCTCTTTCATTTTGCTAAAGGTAATTCTATTG ATGCATAAACGTCTACTTGGATATCTGGTAATACATTTTGGGTAAATGGATTTTCGAGGCCATATTCATATGATATCAGCCTCTAAGAAACAATTTGATA CTTAAAGTTTTGGGTGTTAGAGTTTAGATAAGTATTTGGTGTCTTGTACTGTCTCCTAACGTAGTCATCTCCAAATATTGTTTGGTCTCGATCAATACAG GATGGGAAATACTAATTTTTATTCACTCCAGGTAATAATAGACTCATCATTTCATTGGTTTCCAATTCCGTTACTTGATAGATTTGGGAAAGTTTTAATA CAATGTTGGATGTCATTCACATCTGGTCAATGACTTACTGGGGTGATCTTATGGCTCCCTTTGGAAGGGTTAATAATGCCATGCAAAATAATATGGTAGG CGTTGGCACTAAAAATAGATACAATTAATAGAAGGTTAGAAGTGACTTTTAATTTCAATACTCGATATTGAACACACTAATGATTTATTGATTGTGCAAT ATCTTTCTCTACTGTTTATAAAGACAGCAAAGTGGCAGTTTCCGTCATTTCTCTCTGCACAAAAAGTTAAAAAATATCCTTATGCAGTTTGTTAATTGAA GTATTGAACTCATATAAGAGTATAGTGTTATAAATGCAAACATGCTTAAAACATTTTCTTATGCTTAAAACTAATAACCTGGAACTCAATTTCCTATGCA CATCCCTTGTTTTTCTCAGTTTCTTTAATCCAATCTGCATTGCATTTTAACTTGATTGCAAACATGCATGTGCAATTTTCTAGCGTTTATAGGATACAAA TTGTAGATGAACATTTTACTCCTCATGGATTAATTGGATTCTATCCTCTCTAATAACAAAGAACTAGGATTATTGTAGAGCTGACTAGTTATGCAGACTG GCGATCATGACATACTGATATCTATTGTCATGCATACAGCCAGATTGCGAATCAAACTTTCATCTATGGTATTTCTACCATGGCTTCTGAAGTATGCTTG GTTGTCCTTTTAATTAGGTCACCTTTATAGCTACTCATTTCGATGATCCAAGAATATCAAGTACGGATCTCAGGGATCTTCTTCTTCAGTCTATATCTAC CCTGGTTCAGTACAGGGAGTATTTGGTTGCTTTTGAAAGCAATGTTGCAGCCACTCGAAGGATGCCAAAAGCATTATTATCAGCATTTGATACCAGATCT TGGATCTCAGTGACAAACATACTTGTGCAATTCTGCAAGGGTTCTGGTTTTTCGAAGAATGGAGAATCATCTTCCTCATCAGTTATTTTCCAAAGGTTGC TAAAAGAAGTATGTATGAACAACGAGGGATTGTTTTCAGATTTTCTAAACCGTTTATTTAATACACTTAGCTGGACAATGACTGAGTTTTCGGTTTCCAT TCGAGAAATGCAAGAAAAATACCAGGCAGTAGAGCTTCAGCAAAGGAAGCGATGTGTTGCATTTGATCTTTCATGTAATCTTACAAGGATTCTAGAGTTC TGTACCCGTGAGATTCCTCAAGCATTCATGTCAGGACCAGACACAAACCTGCGAAGGTTAACTGAATTGATCGTCTTTATCTTAAATCAAATTACTTCAG CAGCCGATGCTCAATTTTTTGACTTATCACTTGGACGGCACGATCAATCTTCAGAGAAAGTAAACAGAGGCATGATATTGTCACCGCTTGTAGGGATGAT CTTAAATTTATTGGATGCTACTAATTTGGCTGAATGCCGAGAGAACAATTATGTTGTGGATGTTTTTGCAAGCATGGACTGTCCAAATACTGTTCATTAT GGATTCCAGTATCTTCTGGATTATAACTGGGACGGGTCTTTTAAGGGGGAGGCTTATTTGGCAAAGTATGAGCAGCTAGAGAAATTTCTGACCCTCCTTA CTTGCCGCACAATGGCGCAATATGATAAAGTGGAAGGTGTGGGAGACAAGGATATTGATGATAGCTTGTGCTGCATAT BLAST |
Tissue | pods |
Gene name | LI_gene_177533; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_346919
Blastp | E3 ubiquitin-protein ligase RKP from Arabidopsis with 60.22% of identity |
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Blastx | E3 ubiquitin-protein ligase RKP from Arabidopsis with 59.57% of identity |
Eggnog | RING finger protein 123(ENOG410XQ4V) |
Kegg | Link to kegg annotations (AT2G22010) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019462458.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |