Ll_transcript_346927

• Id Trinity: TRINITY_DN50484_c0_g1_i15
• Name Transcript: Ll_transcript_346927
• Sequence: CAAGTAGTGAAGAAATAAAAGGACCTTATTCACCTTACACACATCATCGTGAATGAAAGGCCAACCGTCGAGTCTTACATTAATTATTAACGAAATTAGT TATCGCCGCCACCATTCAGCATCCGGTAGTTTCAATCCCCCAAATCGACACGTGTCAGTTGCATCCTCATTTCCTTGCACCTACACACTTCTTTTTTCTT CATTTTCTCCAAACTTATGGCACATCATAATATAACCATGATGATTAAAACATAGTATATACTTAATTATTCCAAACTCTCTCATTTCATATTCTATCCA CTATTTAATATTTACTGTTCATAATTATTAATTATGTAATATTTAGGTACACGTGGTATTTACTATTATATGTTATTCCTAAGTTTCAATGGTTCCTGCA AAACCCTAGCCACCTTCCTTTTGTTCATACATGAACCCCATCTATTGTTAGTGCTCAGCAATGTCAAATATTCACATTCTTTTGGATGTTCCCGACTCGG ACAAAATTATCTCCAGTGCGACGATAACTGTGTGAAAAAGAAGTTCAACATTCTTGGGAGAAATTGGACCCCGGGATAGGTAATTGTTGATGCAATGACA AAGAGCATTTTACAACTATGTGGGCTCAACTATATGGATCAAACAGTGTTATAATGTTTTATTGAATTTTGCTCGCAAAGCAATGCTTTTATGCCAGAGA TTCCTCCAAAGTTTCAAGTTTACATGGTTCATGAGTTGTTCTGAGCACAATTGATTTTGTGGTTGTTGGTCGAAGGGGATTTGAAATTGGAAAATCGTTC AGCTGGGTGCAGGTTGGTTGAAGGGGTAGTGCCTTTTGCGTCGCAGATGGGTGAAGACAGCTTTCGTGTTGGCGGGTTTTCAGCTGGTCTGGCTGTGATC TTGAAAGATGAGGAGAGAAAGGAAAATTCACGACTTCTTTCTTGTTGTGATGATTCAAGTCACCAATCTGTGGAGCGAACCCTCGAATACGTGTTTGCCC TTCCCAATAGATCACTCAATCCAGTGACTGGTTCAATTGACAGCAAATTTATTCGCTCTGTCATTAGGAATGATTTCTCTAAGTTTAATTCGAAATCCAG TGATTCATATGATCAAAGAGATGGAACTTTTGTTAGAGGTGGTTGTGGAAATAATGTTGTAGGCCTGGAAAGTTCCAGTATCCGCGGTGATATTGGAATT GTGAAGCAGCGCCCATTGCTTGTAGAGAGCATGTCAAATTTCAGTAGTGTGAGGGCCAACACTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTGTGT TAGAGACATCAGGTATACAGCAGCTCGGTTGGGCTACTCTTTATTGCCCTTTCACCGATGATAGAGGTGTTGGTGATGCTGATGATTCATATGCATACGA TGGGAGGAGAGTTAGCAAGTGGAACAAGGATTCCGAGAAGTATGGCCAGTCATGGTTTGTTGGTGATGTCATTGGATGTTGCATAGATTTAGATCGCGAT GAAATTCTATTCTTCAGGAATGGTAATTCACTTGGGGTGGCATTTCGGGGGATTCGAAAAATGGCTCCTCCTTTGGGATATTATCCAGCAATTTCTCTCT GCCACGGTGAAAGATGTCAATTGAACTTTGGGGCTCGTCCCTTTAAGTATCCAATTGACGGTTATTTTCCTCTCCAGGCTCCTCCATCTAAGAGCTATTA TGTCACCCAGTTGCTGCAATGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGGGCTGAGTATTCTTTAGTCCAAAAGTTGAGAAGAGTGAAGAGA TGCCAGGAGCCAAGAGTATATGGTTTGGGGTCCTTTGTTGTCTTTCATGTTTGAAGTTTTTGGATTGCATGAACCCCATGATTATTCAAGCTTGGATCAA GTTGTTGATATGCTGCTACGATTTAAGGGATCACATTTGCTGTTTGAGCACATCATAAATGCCCTTTCCTGTGGTTGTAAAGTAGCCCCATTTGTTCTAA CTGAATGTCCATACTCTGGGTCATATTCCCACCTTGCATTGACATGTCACCTACTTAGACGAGAAGAACTTATGGTGCTTTGGTGGAAGTCACCATATTT TGAATTCATGTTTGAAGGTTTTCTGTCACAAAAGAATCCAAACAAAGAGGATCTGGAGTCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGAT GCAACTTATGAAGCTAACATGATGTTGACAACTACAGCTCTATCTGAAACAATCAGCAAGATCGAGGAGAAGCACAGGGATCTTTGCCGCTTAGTGATAC AATTTATACCACCTTCAACATCTCCCCAGTTGCCTGGGGCAGTGTTTAGGGCATTTTTACGAAACTTTCTACTGAAGAACGGAGGAGCAGACCGAGATAT CCCACCCCCTGGAGTTTCTAGTAACTCAGTTTTTGTTTCAATTTACACAGTTGTACTTCATTTTTTATCTGAAGGATTTGACTTGGGTGACATCTGTGGC TGTTCAGAGAGCTGCAAAGCAGGCTTACTTCATAGAGGTGGTCTACGAAGTTTTCCTGTAAGGTTGTTTCTGAAAAACGATTCTCTTGGAACTGATATTC CCAGGCTTGGAGGCTCCTATGCTCGTTTATCAAAGCTACACCCTATACTTCATCATGAAATGGAAGTGATTCAATGGTATGAAGGCTGCATGGATGATGT AGAAACCAGAGTTACGCATTCAACCAGGCAGAAGCCATGCTGTTGCTCTAGTTATGACTCTGATTTTGCAGGAAACTTGAAGAATCCAGTCAAATACAGG GCCAAGGGTTCTCGCAGCCATTGTAGCTCTATTCCAGAAAGATCTGCTCATGTAACTCCTGAATGCATTGATAGGAGTTTGGAAGATGAGATAACAAATA AACCTAGCTCCAGTGATCAATCTGAACCTAGTTGTGGTCATCACCAGGTGCATCATATGAAGACTTTACCTAAGGATAGTGCTTTGTCTAAAGCTACACT ACTAGAAGAAGAGCTACTTGACGTCTTACTGTGGTTGTATAAATATGGTCTTGCATCAAATTTCAAGAATGCATCATACTACATGACTCATCAGGCACAG ACAATCTTGTGTTTGGAGGAAACTGATAAGCAAATAAGAGAAAGATCTTGTAGCGAGAAATTGAAGCATTTGAAAGAATCTCGGAATGAATATAGAGAGC AGGTTATTGATTGTGTCAGGCGTTGTGCTTGGTATCGTGTATCTTTATTTGCACGATGGAAGCAGAGAGGAATGTTTGCCATGTGCATGTGGGTGGTCCA GATGCTTCTAATTCTGAGCAATATGGATTCGGTGTTTATCTATGTCCCTGAATACTATTTGGAAGCTCTGGTTGATTGCTTTCATGTGTTGAGGAAAAGT GATCCACCATTTGTTCCATCCACATTTTTCATCAAGCAAGGACTTACTTCATTTGTCACCTTTATAGCTACTCATTTCGATGATCCAAGAATATCAAGTA CGGATCTCAGGGATCTTCTTCTTCAGTCTATATCTACCCTGGTTCAGTACAGGGAGTATTTGGTTGCTTTTGAAAGCAATGTTGCAGCCACTCGAAGGAT GCCAAAAGCATTATTATCAGCATTTGATACCAGATCTTGGATCTCAGTGACAAACATACTTGTGCAATTCTGCAAGGGTTCTGGTTTTTCGAAGAATGGA GAATCATCTTCCTCATCAGTTATTTTCCAAAGGTTGCTAAAAGAAGTATGTATGAACAACGAGGGATTGTTTTCAGATTTTCTAAACCGTTTATTTAATA CACTTAGCTGGACAATGACTGAGTTTTCGGTTTCCATTCGAGAAATGCAAGAAAAATACCAGGCAGTAGAGCTTCAGCAAAGGAAGCGATGTGTTGCATT TGATCTTTCATGTAATCTTACAAGGATTCTAGAGTTCTGTACCCGTGAGATTCCTCAAGCATTCATGTCAGGACCAGACACAAACCTGCGAAGGTTAACT GAATTGATCGTCTTTATCTTAAATCAAATTACTTCAGCAGCCGATGCTCAATTTTTTGACTTATCACTTGGACGGCACGATCAATCTTCAGAGAAAGTAA ACAGAGGCATGATATTGTCACCGCTTGTAGGGATGATCTTAAATTTATTGGATGCTACTAATTTGGCTGAATGCCGAGAGAACAATTATGTTGTGGATGT TTTTGCAAGCATGGACTGTCCAAATACTGTTCATTATGGATTCCAGTATCTTCTGGATTATAACTGGGACGGGTCTTTTAAGGGGGAGGCTTATTTGGCA AAGTATGAGCAGCTAGAGAAATTTCTGACCCTCCTTACTTGCCGCACAATGGCGCAATATGATAAAGTGGAAGGTGTGGGAGACAAGGATATTGATGATA GCTTGTGCTGCATATGTTGTACATACAAAGTGGATGCTCTGATTGCACCTTGTTTACATAGATCTTGCTATGGCTGCATAACCAGACATCTTTTGAACTG TCAGAGATGTTTCTTTTGCAACATAGCAGTTACAGGTGTAAGCAAAATTGATGAGAAGATGGGCTAAGACACACTTTTATGTGGCTGCTTGGTCCCTGGT GGAACTTGAGCCAGTAAGTGACTTATTAGCTTATCTAGAGGAAAAGGAAACCGATAGAAAAGAGTGTAGAGGAAGTGGAAGGGCAGGGTAGGATAGCAGA TAATATAATAAAATAGTGTAATACTTGCATGGTTATTGGTGAGTCTCTGTGTCATAGGGGTTAATAGGGATGGTCTAAGAAGTCAATATGTTGAATTGAG AACTATGTTGGCTGTTAGAGAGTATCATATTTGTTCTGTCAGTAGGCAATGTAAGTGGCAAGGAAAATCTCCAGTTCTCCTTTCAGCTTGACAACTCTTC ATTTTTCACAAGATTAGCCTAGGAAACCTGCTAAAATGGTGGGTGCAATTACATGTCATCACATATTTTCTCTCCGAAATTCATGTTTACAATCAGTATT TGTGCCTCCCAACCGTGCCTTGATGGCGGTCTGGTGGAATCGGCTATACCAAGTTTGTAGTTTTAGCCGGTCATTGCTAGCAGTAATATCTGTTCCATTT GGCAGTTGTACTGTTCTTATTGACATGTACTTCTTATGTGAGTTCATTGATCATTCCATTGAAATGTTGATGAAATGCCTGACAGGAGTGTACCAAACTG AGTCCTTGATCTAAAAAATTACCCGGGAAGTGGAACACCGTCATCATGTCATCTTTCGACTCTTTCAGAATGGTAGAACAGGATATTAGTATGGAATGCA GATGAAAGTGCAAATATATTATAGGCTAGAACAACACCAAAGTGAAACATAGATGAGAAGCTCAGCTGGATTTTGTCATCCATTTAGTAAAATTATCGCT CTGGATTGTGTTAGTAGTTCATCGTCTATTCAATGTTTGTAATTTGTTTATAGAAAAGAAATTATAAGAACATGTAGTCTAAACCGAGCAAATGATTAGA TGCATGGGGGTTTAAACCAGGAAATAAATTTTGTATGGAAAGCTTGTATCAGTTATATGATTTGGATGCTAAAAATGATACAGTCAAATTGTAAAAGGTA ATCCCACCATCCATCTTTTCTCTATACTCCTTCAACAACGTTTAAAGATGAATAATCGAACAAGCCC
• Tissue: pods
• Gene name: LI_gene_177533;
• Additional information: details;

Expression of Ll_transcript_346927

FPKM

• PAB: 1.6
• PNAB: 4.5
• PS1: 3.7
• PS2: 2.5
• PS3: 3.1
• PW1: 4.2
• PW2: 3.7
• PW3: 2.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_346927

• Blastp: E3 ubiquitin-protein ligase RKP from Arabidopsis with 62.32% of identity
• Blastx: E3 ubiquitin-protein ligase RKP from Arabidopsis with 61.58% of identity
• Eggnog: RING finger protein 123(ENOG410XQ4V)
• Kegg: Link to kegg annotations (AT2G22010)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019462466.1)
• Pfam: Ubiquitin elongating factor core (PF10408.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;