| Id Trinity | TRINITY_DN50484_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_346914 |
| Sequence | CAAGTAGTGAAGAAATAAAAGGACCTTATTCACCTTACACACATCATCGTGAATGAAAGGCCAACCGTCGAGTCTTACATTAATTATTAACGAAATTAGT TATCGCCGCCACCATTCAGCATCCGGTAGTTTCAATCCCCCAAATCGACACGTGTCAGTTGCATCCTCATTTCCTTGCACCTACACACTTCTTTTTTCTT CATTTTCTCCAAACTTATGGCACATCATAATATAACCATGATGATTAAAACATAGTATATACTTAATTATTCCAAACTCTCTCATTTCATATTCTATCCA CTATTTAATATTTACTGTTCATAATTATTAATTATGTAATATTTAGGTACACGTGGTATTTACTATTATATGTTATTCCTAAGTTTCAATGGTTCCTGCA AAACCCTAGCCACCTTCCTTTTGTTCATACATGAACCCCATCTGTAAGGTTTTTTTATTACTATTATTGTATTTCATTTGATTAATTAATTTAATGTTTA GTTAACTATGCTGATTTGAAATATGAAAATATTTTGGTTCCACTATTGATAATTTGTAATAATAGTGCAGCGTGTTTTATTTCTTACATTTTTTTAGATT GTTAGTGCTCAGCAATGTCAAATATTCACATTCTTTTGGATGTTCCCGACTCGGACAAAATTATCTCCAGTGCGACGATAACTGTGTGAAAAAGAAGTTC AACATTCTGTATAGTCACTTATTTCAATTTTAATTTATTTTCCTTTTTTTTATAACAAAAGTGATGAGAAGGTTGATGTGTTGTTTTACTTCTTAGTGGG AGAAATTGGACCCCGGGATAGGTAATTGTTGATGCAATGACAAAGAGCATTTTACAACTATGTGGGCTCAACTATATGGATCAAACAGTGTTATAATGTT TTATTGAATTTTGCTCGCAAAGCAATGCTTTTATGCCAGAGATTCCTCCAAAGTTTCAAGTTTACATGGTTCATGAGTTGTTCTGAGCACAATTGATTTT GTGGTTGTTGGTCGAAGGGGATTTGAAATTGGAAAATCGTTCAGCTGGGTGCAGGTTGGTTGAAGGGGTAGTGCCTTTTGCGTCGCAGATGGGTGAAGAC AGCTTTCGTGTTGGCGGGTTTTCAGCTGGTCTGGCTGTGATCTTGAAAGATGAGGAGAGAAAGGAAAATTCACGACTTCTTTCTTGTTGTGATGATTCAA GTCACCAATCTGTGGAGCGAACCCTCGAATACGTGTTTGCCCTTCCCAATAGATCACTCAATCCAGTGACTGGTTCAATTGACAGCAAATTTATTCGCTC TGTCATTAGGAATGATTTCTCTAAGTTTAATTCGAAATCCAGTGATTCATATGATCAAAGAGATGGAACTTTTGTTAGAGGTGGTTGTGGAAATAATGTT GTAGGCCTGGAAAGTTCCAGTATCCGCGGTGATATTGGAATTGTGAAGCAGCGCCCATTGCTTGTAGAGAGCATGTCAAATTTCAGTAGTGTGAGGGCCA ACACTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTGTGTTAGAGACATCAGGTATACAGCAGCTCGGTTGGGCTACTCTTTATTGCCCTTTCACCGA TGATAGAGGTGTTGGTGATGCTGATGATTCATATGCATACGATGGGAGGAGAGTTAGCAAGTGGAACAAGGATTCCGAGAAGTATGGCCAGTCATGGTTT GTTGGTGATGTCATTGGATGTTGCATAGATTTAGATCGCGATGAAATTCTATTCTTCAGGAATGGTAATTCACTTGGGGTGGCATTTCGGGGGATTCGAA AAATGGCTCCTCCTTTGGGATATTATCCAGCAATTTCTCTCTGCCACGGTGAAAGATGTCAATTGAACTTTGGGGCTCGTCCCTTTAAGTATCCAATTGA CGGTTATTTTCCTCTCCAGGCTCCTCCATCTAAGAGCTATTATGTCACCCAGTTGCTGCAATGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGG GCTGAGTATTCTTTAGTCCAAAAGTTGAGAAGAGTGAAGAGATGCCAGGAGCCAAGAGTATATGGTTTGGGGTCCTTTGTTGTCTTTCATGTTTGAAGTT TTTGGATTGCATGAACCCCATGATTATTCAAGCTTGGATCAAGTTGTTGATATGCTGCTACGATTTAAGGGATCACATTTGCTGTTTGAGCACATCATAA ATGCCCTTTCCTGTGGTTGTAAAGTAGCCCCATTTGTTCTAACTGAATGTCCATACTCTGGGTCATATTCCCACCTTGCATTGACATGTCACCTACTTAG ACGAGAAGAACTTATGGTGCTTTGGTGGAAGTCACCATATTTTGAATTCATGTTTGAAGGTTTTCTGTCACAAAAGAATCCAAACAAAGAGGATCTGGAG TCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGCAACTTATGAAGCTAACATGATGTTGACAACTACAGCTCTATCTGAAACAATCAGCA AGATCGAGGAGAAGCACAGGGATCTTTGCCGCTTAGTGATACAATTTATACCACCTTCAACATCTCCCCAGTTGCCTGGGGCAGTGTTTAGGGCATTTTT ACGAAACTTTCTACTGAAGAACGGAGGAGCAGACCGAGATATCCCACCCCCTGGAGTTTCTAGTAACTCAGTTTTTGTTTCAATTTACACAGTTGTACTT CATTTTTTATCTGAAGGATTTGACTTGGGTGACATCTGTGGCTGTTCAGAGAGCTGCAAAGCAGGCTTACTTCATAGAGGTGGTCTACGAAGTTTTCCTG TAAGGTTGTTTCTGAAAAACGATTCTCTTGGAACTGATATTCCCAGGCTTGGAGGCTCCTATGCTCGTTTATCAAAGCTACACCCTATACTTCATCATGA AATGGAAGTGATTCAATGGTATGAAGGCTGCATGGATGATGTAGAAACCAGAGTTACGCATTCAACCAGGCAGAAGCCATGCTGTTGCTCTAGTTATGAC TCTGATTTTGCAGGAAACTTGAAGAATCCAGTCAAATACAGGGCCAAGGGTTCTCGCAGCCATTGTAGCTCTATTCCAGAAAGATCTGCTCATGTAACTC CTGAATGCATTGATAGGAGTTTGGAAGATGAGATAACAAATAAACCTAGCTCCAGTGATCAATCTGAACCTAGTTGTGGTCATCACCAGGTGCATCATAT GAAGACTTTACCTAAGGATAGTGCTTTGTCTAAAGCTACACTACTAGAAGAAGAGCTACTTGACGTCTTACTGTGGTTGTATAAATATGGTCTTGCATCA AATTTCAAGAATGCATCATACTACATGACTCATCAGGCACAGACAATCTTGTGTTTGGAGGAAACTGATAAGCAAATAAGAGAAAGATCTTGTAGCGAGA AATTGAAGCATTTGAAAGAATCTCGGAATGAATATAGAGAGCAGGTTATTGATTGTGTCAGGCGTTGTGCTTGGTATCGTGTATCTTTATTTGCACGATG GAAGCAGAGAGGAATGTTTGCCATGTGCATGTGGGTGGTCCAGATGCTTCTAATTCTGAGCAATATGGATTCGGTGTTTATCTATGTCCCTGAATACTAT TTGGAAGCTCTGGTTGATTGCTTTCATGTGTTGAGGAAAAGTGATCCACCATTTGTTCCATCCACATTTTTCATCAAGCAAGGACTTACTTCATTTGTCA CCTTTATAGCTACTCATTTCGATGATCCAAGAATATCAAGTACGGATCTCAGGGATCTTCTTCTTCAGTCTATATCTACCCTGGTTCAGTACAGGGAGTA TTTGGTTGCTTTTGAAAGCAATGTTGCAGCCACTCGAAGGATGCCAAAAGCATTATTATCAGCATTTGATACCAGATCTTGGATCTCAGTGACAAACATA CTTGTGCAATTCTGCAAGGGTTCTGGTTTTTCGAAGAATGGAGAATCATCTTCCTCATCAGTTATTTTCCAAAGGTTGCTAAAAGAAGTATGTATGAACA ACGAGGGATTGTTTTCAGATTTTCTAAACCGTTTATTTAATACACTTAGCTGGACAATGACTGAGTTTTCGGTTTCCATTCGAGAAATGCAAGAAAAATA CCAGGCAGTAGAGCTTCAGCAAAGGAAGCGATGTGTTGCATTTGATCTTTCATGTAATCTTACAAGGATTCTAGAGTTCTGTACCCGTGAGATTCCTCAA GCATTCATGTCAGGACCAGACACAAACCTGCGAAGGTTAACTGAATTGATCGTCTTTATCTTAAATCAAATTACTTCAGCAGCCGATGCTCAATTTTTTG ACTTATCACTTGGACGGCACGATCAATCTTCAGAGAAAGTAAACAGAGGCATGATATTGTCACCGCTTGTAGGGATGATCTTAAATTTATTGGATGCTAC TAATTTGGCTGAATGCCGAGAGAACAATTATGTTGTGGATGTTTTTGCAAGCATGGACTGTCCAAATACTGTTCATTATGGATTCCAGTATCTTCTGGAT TATAACTGGGACGGGTCTTTTAAGGGGGAGGCTTATTTGGCAAAGTATGAGCAGCTAGAGAAATTTCTGACCCTCCTTACTTGCCGCACAATGGCGCAAT ATGATAAAGTGGAAGGTGTGGGAGACAAGGATATTGATGATAGCTTGTGCTGCATATGTTGTACATACAAAGTGGATGCTCTGATTGCACCTTGTTTACA TAGATCTTGCTATGGCTGCATAACCAGACATCTTTTGAACTGTCAGAGATGTTTCTTTTGCAACATAGCAGTTACAGGTGTAAGCAAAATTGATGAGAAG ATGGGCTAAGACACACTTTTATGTGGCTGCTTGGTCCCTGGTGGAACTTGAGCCAGAGTGTACCAAACTGAGTCCTTGATCTAAAAAATTACCCGGGAAG TGGAACACCGTCATCATGTCATCTTTCGACTCTTTCAGAATGGTAGAACAGGATATTAGTATGGAATGCAGATGAAAGTGCAAATATATTATAGGCTAGA ACAACACCAAAGTGAAACATAGATGAGAAGCTCAGCTGGATTTTGTCATCCATTTAGTAAAATTATCGCTCTGGATTGTGTTAGTAGTTCATCGTCTATT CAATGTTTGTAATTTGTTTATAGAAAAGAAATTATAAGAACATGTAGTCTAAACCGAGCAAATGATTAGATGCATGGGGGTTTAAACCAGGAAATAAATT TTGTATGGAAAGCTTGTATCAGTTATATGATTTGGATGCTAAAAATGATACAGTCAAATTGTAAAAGGTAATCCCACCATCCATCTTTTCTCTATACTCC TTCAACAACGTTTAAAGATGAATAATCGAACAAGCCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_177533; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_346914
| Blastp | E3 ubiquitin-protein ligase RKP from Arabidopsis with 62.32% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase RKP from Arabidopsis with 61.58% of identity |
| Eggnog | RING finger protein 123(ENOG410XQ4V) |
| Kegg | Link to kegg annotations (AT2G22010) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019462466.1) |
| Pfam | Ubiquitin elongating factor core (PF10408.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |