Ll_transcript_345078

• Id Trinity: TRINITY_DN50491_c0_g1_i5
• Name Transcript: Ll_transcript_345078
• Sequence: ATTTATGGCACAAAGACATCATTGCTTGATTATTTCTTATTTTACTTACCACTTTGTACTGTATGGTGGTTGTTTCTGCTTCATGATGATACTTTTCTTC AATTCACTTCATCAATGATTGGACTAAAAAGGAAAAACTGTGCTTAAATTTCTACTTGTAATTTTCTTATTGCAGATCCACTGTCACTTATCAGGGATCA CCGAGCAAAGGAGGTTTTAACTGCTCATGGCATAACAGTACGTTCCTTTAATTCAGACTTACTGTATGAACCATGGGATGTGAATGATGACCATGGCCAA CCATTCACAACTTTTGATGCTTTTTGGGAAAGATGCCTTAACATGCCTTATGACCCACCAGCACCTTTTCTCCCACCTAAAAGGATTATTCCAGGAGATA TATCAAGGTGCCCTTGTGATGCATTGGTGTTTGAAGATGAATCAGAGAAGTCGAGCAATGCACTTCTTGCTCGAGCATGGTCACCCGGGTGGAGCAATGC GGACAAGGCCTTGACAACATTCATAAACGGTCCACTAATTGAGTATTCCGAAAATCGCAGGAAGGCTGACAGTGCCACAACCTCATTTCTCTCCCCGCAT TTGCATTTTGGTGAGGTGAGTGTCAAGAAAGTTTTCCATCTTGTTCGGATTAAGCAAGTGCTCTGGGCCAATGAAGGAAACAAGGCTGGTGAGGAAAGTG TGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTATTCAAGGTACATCAGTTTCAACCATCCCTATAGTCATGAAAGGCCTCTTCTAGGCCACCTCAA GTTTTTTCCTTGGGTAGTCAATGAAGGATATTTTAAGGCATGGAGACAAGGCAGAACAGGCTACCCTTTAGTGGATGCTGGCATGAGAGAGTTGTGGGCC ACTGGTTGGCTTCATGATCGGATACGTGTTGTAGTTTCGAGTTTCTTCGTGAAAGTTCTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTCTGGGATA CCCTCTTGGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATAACTGGTACTCTACCCGATGGTCGCGAATTTGACAGAATAGATAATCCACA GTTTGAGGGATACAAATTTGATCCGAATGGAGAATATGTAAGACGCTGGCTTCCCGAGCTTTCCAGATTACCAACTCAATGGATACATCATCCATGGAAC ACACCAGAATCGGTACTCCAAGCTGCTGGTATTGAACTTGGGTCAAATTACCCTCTTCCAATTGTCGGAATAGACGAAGCGAAAGCAAGGTTGCAAGAAG CACTTATACAAATGTGGCAACAAGAAGCAGCTTATAGAGCTGCAACTGAAAATGGAACTGAGGAAGGGCTTGGAGAGTCATTTGAATCAACTCCAATTGC TTTTCCTGAGGACATACAAATGGAGGAAAGACATGAACCTGCGAGGAACAATACTCCTGCTGCAGCGACTCGGCGCTACGAGGATCAGATGGTGCCTAGT ATCACTTCTTCCTTGGTGAGAGCGGAAGGGGAAGAAACTTCTTTGGATGTTCAAAACTCAGCCGAAGAGAGCAGAGCTGAAGTTCCAATAAATGTGAATG CACAAGAAAATGCAAGAGAGACAGTGTTTCACACTGCTAACAGAAACACTCAACTACAGCATAATAACAATAATACAATGAGGTTTCGAAATGGAGCCGA AGATTCCACAGCTGAATCTTCAAGTAGTACTAGGAGAGAAAGGGATGGAGGAGAAGTTCCGGTATGGTCTCCGACGGCTTCTAGTTACCCAGAGCCATTT GTAGATGATGAAAATGGTTTAGGATCCAGCTCATCTTACTTACAGAGGCATCCTCAGTCTCACCAATTGATGAATTGGACAAGATTACCTCAGACTGGGT AATTCACTTCTAAACCAAGCAGACTAGAGAAGCAGGTAGGTGGAAAATGAATTCTCCTCTTCTTTTGGAAAGTGTGATGGCAAACCTCTCATTGAACATA CATATACATGTGTTCATTTCCTACTCCTTAAACCAGCATGACATTTGATTAATGCTGACTTCCAAATTTGTATGAAAATTTCAATTCATAGAGGCAGTTT CTTTTGCTTTCTTATACAATATGTCTAGGCCTACTTTATAGTATATTCTGTGCAGTGAGGGAGAGAGAGCCATTATTGGATCTTTAGTCCTCTAATAAAC TAAGGTTTGTGATTATCATTTAAGGTAGATATATCACTTTATAATCTCGGCGTTCTTCACTAGTTTAATAGTGAAAAGTTTCTTTACATTAAGAGTATCA TTCTGTCCATGTAAAAATGTATACACAATCGTTACATTATTTTGAAGACAGTCAATGATGATTAAACATAAATAATAAATGATACACTCAGAATGTATAA AACTCACATACTATCTGCGTATGCATTTTTTTTCT
• Tissue: pods
• Gene name: LI_gene_177581;
• Additional information: details;

Expression of Ll_transcript_345078

FPKM

• PAB: 16.2
• PNAB: 2.7
• PS1: 1.1
• PS2: 0.8
• PS3: 0.7
• PW1: 4.2
• PW2: 5.2
• PW3: 8.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_345078

• Blastp: Cryptochrome-1 from Arabidopsis with 76.76% of identity
• Blastx: Cryptochrome-1 from Arabidopsis with 75.81% of identity
• Eggnog: deoxyribo-dipyrimidine photolyase(COG0415)
• Kegg: Link to kegg annotations (AT4G08920)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019430896.1)
• Pfam: FAD binding domain of DNA photolyase (PF03441.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;