Ll_transcript_345079

• Id Trinity: TRINITY_DN50491_c0_g1_i6
• Name Transcript: Ll_transcript_345079
• Sequence: GGATAATGTTGCATGCTTTTTGTGGGTTGTGAATTGGAAAATGTTGAAACGCAAAAGAAAGAGAGAGAAAAATATAATAGAATTTTAGGCTGCGACTGTA TCTATCATTCTCAGATTCTCTGTCTTGTCACGTGTATCGAAGTAGAAGGAACTAGAGCCAGGGATATGATATGTTTTGTTGCATAAGATAATAATAGATA AATGAAAATCTACACAACATAAAAAAAAATTTGTGGTTGCAGTTTGTCTATCAATTCACTTGTTTGTATCCCCCACTAGTTAACCAATCTTCTTCACTTC CTCCTTTTCTCTCTCTTCTCTCCTTGGACCCTCTCTCTCTTTTTCTTCACTAGCAACTTGGGTGAAAGAACCAAAATCAGAATTTGCTGGAAACAATTCC CTCACTCAAAGAAACGCTAAAGTGTGGGGGAAGGACAAGTAAAAGATAAGAGGCAATACCCAATTATAAAATTGTGTTTTTGTTATCTCTTTATGTCTTC AACGTCTTCATTATTAAGGAAAACCCAAAAAAAGATAGGATCATTAAGAGTTATTAGCATCAGTTGGTGAGATTTAGTACTATAAAAAAGGAAGGTAAGA GATCTGGTATATGGTTAAGAGTGTGTTTGTGTGTGAATAAGGTTAGTGGAGATGTCAAGTGGTGGATGCAGCATAGTTTGGTTTAGAAGGGATCTGAGGG TTGAGGATAACCCTGCACTGATGGCAGGAGTAAGAGCAGGATCTGTTGTTGCTGTTTTCATTTGGGCTCCTGAAGAAGAAGGTCAATATCAACCTGGAAG GGTTTCAAGGTGGTGGCTTAAGCATAGTTTGGCTTACCTTGATTCATCTTTGAGAAATCTTGGCACTCCTCTTATTACCAAGAGATCCACTGATAGTGTT TCTGCTTTATTAGAGGTTGTTAAGTCCACTGGTGCTACTCAACTTTTCTTTAACCACTTATATGATCCGTTGTCACTTATCAGGGATCACCGATCAAAGG AGGTTCTGACTGCTCATGGCATAACCGTGCGTTCGTTTAATTCGGACTTATTATATGAACCATGGGATGTCAATGATGACCATGGCCAACCTTTCACAAC TTTCGATGCTTTTTGGGAAAGATGCCTCAACATGCCTTATGACCCACAATCACCTTCTCTCCCACCTAAAAGGATTATTCCAGGAGATACATCAAGGTGC ACGAGTGATACATTGGTGTTTGAAGATGAATCAGAGAAGTCGAGCAATGCACTTCTTGCTCGAGCATGGTCACCCGGGTGGAGTAATGCAGACAAGGCTT TGACAACATTTATAAATGGTCCACTGATCGAGTACTCAGAAAATCGCCGGAAGGCTGACAGTGCAACAACCTCATTTCTGTCCCCTCATTTGCATTTTGG TGAGGTGAGTGTCAAGAAAGTTTTCCATCTTGTTCGGATCAAGCAAGTGCTTTGGGCCAATGAAGGAAATAAGGCTGGTGAAGAAAGTGTTAACTTGTTT CTCAAGTCTATTGGGCTTAGAGAGTATTCGAGGTACATCAGTTTCAACCATCCATATAGTCATGAAAGGCCTCTTCTAGGCCACCTCAAGTTTTTTCCTT GGGTGGTGAATGAAGGCTATTTTAAGGCGTGGAGACAAGGTAGAACAGGATACCCATTGGTGGATGCTGGCATGAGAGAGTTGTGGGCCACTGGTTGGCT TCATGATCGTATACGTGTTGTTGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCGTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTGTTAGAT GCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATAACTGGTACCCTACCTGATGGTCGCGAATTTGACCGAATAGATAATCCACAGTTTGAGGGAT ACAAATTTGATCCAAATGGAGAATATGTACGGCGCTGGCTTCCAGAGCTTGCTAGACTACCAACTGAATGGATACATCATCCATGGAATGCACCGGAAGC GGTACTCGAAGCTGCAGGAGTTGAGCTTGGATCAAACTATCCCCTTCCGATTGTAGGAATAGATGCAGCAGAAACCAGATTAGAAAAAGCATTATCAGAA ATGTGGCAACTAGAAGCAGCTTCAAGAGCTGTCACTGAAAATGGAACCGAGGAAGGGCTTGGTGACTCATCGGAATCAATTGGTGTTGCTTTTCCTCAAG ACATCCAAATGGAGGAAAGTGATGAACCTGCAAGGAACAATTCTCCTCCTGTTGCTCGACGCTACCAGGATCAGATGGTTCCAAGTATCACTTCTTCCCT CGCGAGAGTTGAGGAGGAAGTAACTTCTGATATTAGAAACTCGGCAGAAGAAAGCAGAGCAGAAGTACCAATAAATGTAAACGCGCGGCAAAATGCAAGA GATACATTGAATGAAAGGATGTTGCAGACTACTCAAAGAAATGCACAACTACAGTACAATACTGGAATGCACATGAGAAATGCAGCCGAAGATTCAGCAG TAGAATCGTCAAGTAGTAGGATGAGGAGGGAGAGAGATGGAGGCATAGTTCCAGAATGGTCTCCTCCGGCTTCTAGTTACTCGGAGCAGTTAGTAGGAGA TGAAAATGGTATAGCTAGCAGTTCATCTTACTTGCAAAGGCATCCTCAGTCTCACCAATTGCTGAATTGGAGGGGACTACCTCAGACCGGGATCCTATGT TCTAAACATTTGAAGAACATCAAATGATTTGCCAATCTTCCAACTGAAGGTTTCCATATTTGGTTTTGGTTATTTGTAGAGAATGGCTGCATTAAAAAAA GTGATTCATATATAAAGCAAACAGATTAGAAGCAAGAAGTTGGATACTATTTTCTTAAGATAAAATGGGATGGTGAACCTGCATTGAACATACATGTATC AATTTCGTACAACTTTTACCAGTCTCAATACAAGATTAATAGCTGACCTTTGATGTGTATGAAAATTTGAATTCATAGAGCAATTCATCTGCAGATCCAT TTTGGTTTCTTGTACAATATTTGTTGGCTTGGTGTATAGTATATTTTGTGTAGTGAGGGAGAAAGAGACACTATAGGATCTTTGGTCCACTAATAAACTT AGGTTTGTATTTATTACTTAAGGCCAATATATTACTTTTATCAGTTTTATGATCCATGCTTTATTTACATTTTGTATGCAACTCATCTTGGTGCATAGAA AATGTAAAGTGCACCTCATCTTGGGGCTCACATTTCTGAAAATTGTGTGGCATTAC
• Tissue: pods
• Gene name: LI_gene_177581;
• Additional information: details;

Expression of Ll_transcript_345079

FPKM

• PAB: 6.3
• PNAB: 0.5
• PS1: 0.2
• PS2: 0.3
• PS3: 0.2
• PW1: 0.5
• PW2: 1.1
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_345079

• Blastp: Cryptochrome-1 from Arabidopsis with 75.74% of identity
• Blastx: Cryptochrome-1 from Arabidopsis with 75.29% of identity
• Eggnog: deoxyribo-dipyrimidine photolyase(COG0415)
• Kegg: Link to kegg annotations (AT4G08920)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019415696.1)
• Pfam: DNA photolyase (PF00875.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;