Ll_transcript_402563

• Id Trinity: TRINITY_DN50503_c0_g2_i23
• Name Transcript: Ll_transcript_402563
• Sequence: GGAGTCTTTCTTTCTCTAGTTTAGTTCTTAAAAGTTATATAAGGTTGTAGCATTAACTTAGCATAGGCATAGTGATAGTGGAGCCCATAGCAGGACCTTG CTTTGCTGGATTCAGTTCTCCATTGCTGGTCTTTTTATGGGACTTGTCTCCTCAGTTTTCAAGAAAATAAAATAAACCCTTTTACTTGCTCAATAATTTT CAACACTAAAGTCTTCATTTTTCGTTTTAATTATTCTTTCATGCACATCTTCTTCAATAACAATTTCTACATCTTCATACCACTTGCTACAAAGAAACCA GAGGAATAACAAAATCCAAAACCAACAAAAAAACTTCACTTTGTTATTTTCTATTCATTTTGATGGATCCACAGATCTGATGCTTTCACAAACTTTTCCA CTCACATCTTCTTTTCTTTCTAGATTGTTCTTTCCAGTAGCTTCCAATCAATAGTCAAATTTGTGGGTTTGTAGGGATCATCATCATTGTGCTGGCTGGT GTGTGGAGTGCAGAACTGTGTGTATAGTGAATGAAAAAACTTGGGTGAAATTGTTTAGGAGTAGTTGATAGATGTCGAAATCCTTGAGGGTAGTTTGATG AGATGAGGGATGTTATCAGAGTTGATGAAATTTTTGAGGGCCTGCTTTCGGCCGAGCTCGGACAGATACACACGCACAGGTTCGGATGCTGGAGGTAGAC AGGATGGACTATTGTGGTACAAAGACTTGGGACAGCATTTTCACGGTGAATTTTCGATGGCTGTGATCCAAGCTAATAACTTGCTGGAGGATCAGAGTCA GGTTGAATCTGGTACTTTGAGTACCAATGAATTTGGCCCTTATGGTACCTTTGTTGGGGTTTATGATGGGCATGGAGGGCCTGAGACATCACGGTTTATC AATGATCACCTATTTCACCATATCCAGAGATTTACTTCAGAGCAACAATCTATGTCAGTGGATGTAATTCGCAAGGCATTTCAAGCAACAGAAGACGCAT TTATGTCACTCGTTGCCAGACAATGGTCGATGAAGCCGCAAATTGCAGCTGTTGGATCATGCTGTCTTGTTGCTGTTATTTGTAATGGAACTCTTTATAT AGCAAATGCTGGCGATTCCCGAGCTGTTATGGGAAGAGTAGTCAAGGCAACTGGTGAGGTTTTAGCCACACAATTATCAACAGAGCACAATGCATCAATA GAATCTGTAAGACAGGAGCTGCATTCTTTGCACCCTGATGATCCAAATATTGTTGTTTTAAAGCATAACGTGTGGCGTGTAAAGGGCATTATTCAAGTAA GTCGCCTGCAGCTTATGCTATTAATTCTTTGCTGCTAGATCTTCTATTTATATATCGTAAGTGCCACATGTACATGCAGTAGATAACATCATGACAACCA ATTCATTGCTGAAGTCAAAGCATTGATCTCCTAATATCAATTTAATTTTTAGCACTTGTGTGTTGGAATCAACTTTTCAATCTTTCGGATGTGAAGAATG ACTTCAAAAATATAGTATGTGCAGATCTATGCTGTGCAGTAGTAAAAAGGGGTGGGGTAGGTTTATTTTTTGTCGCAACAAATGTAGGATGTCTGAAAGC TATAAGAGCGGAAAGATTCAAGTTCCCTTGGCTTCATGTAGTTCTATTCTAGCAACTTTTTGTTATAACTTATATGGTGAGAATTTAACTTTGTGATGTT GAATACACATATTAAGATGTTGTCTTACTTGTCTATAATTTTCAGTGAAAGTTGTTGTTTGTAATGCTTCCGTATCTTTCTACTCTTTCATGAAACTTGG ACCTTCAGCTTCTCATATTTAGTTTTTGTCTTGATAGCCCCCCCTCTCTTGATTGAATTACATTTTAACCTTTTAAAATCTTTTACTTGCAGGTTTCTAG ATCTATTGGCGATGTATATTTGAAAAAGGCCGAATTCAACAGAGAACCTCTTTATGTTAAGTTTCGACTTCGTGAGCCGTTCAAGAGGCCAATACTGAGC TCAGAACCATCAATAACAGTGCATCAGTTGCAACCACATGATCAATTTGTTATATTAGCATCTGATGGGCTATGGGAGCACCTCAGCAATCAAGAAGCAG TTGATATAGTTGCAAATAATCCCCACAGTGTAAGATAAAGATTTAAATCAACTATGTTAGATAGCATTATATCATTATCAGTAAGATTAAAACGGATACA TTTACGGTTCATCATTTATAATTGAAAGTCGCCATGCTGTTGTTCCTCATGCCTTAAGATATGAACCCCTGCTACATTGTTTTGAGTCTGTTACATTTGG TTGAACAAAAACAGTGAAGCGATCTAAGTCGTTTCTTCTGTAGAATCATGTCAGCATGCAAACTCATTACAGATTGTCACTTCAAGATATTAATATAGGA AGTAATTCTTCAACATGTAAAAAATATCAATTTTTATAATTGAGAGCTAGTCATTTTTCGATATGAAAATTGTGACATGATTTTTTTAGCGGTCTTGCAG TATTTAGGTTAAAGAATCTTATTCTTTAATGTTTAAATTATAACCAAAAAAAGCTCGTCTTTACAACTTTGCATAGAGAACTTTATTCTGGTGTATAAAA ATGAAATATGTCTGGGTAAGAAATTAGCATTACATTTAGTATACTTAAATTACTTTTTTGCATGATATAGAAAATATGTTCCAACTAGTGCCTTGAAAAA GCTTAATACCATTTATTTGTTAATGGATATTGCTGGTTCCCAAAGAATTTCATGCAGAAGCATAATAAAAGATAGTTTTATGCTTTATTATCTATCCTTC TTTCAGGGAAGTGCAAGGAGGCTGGTGAAAGTTGCACTTCAACAAGCAGCAAAGAAGAGAGAAATGAGATATTCAGACTTGAAGAAAATTGACCGCGGAG TTCGTCGACATTTCCATGATGACATCACTGTGATTGTTGTGTATCTTGACTCAAATCTCATGAGTAGGGCCAGCACTGTGAAGTTCCCTAGCATTTCTGT TAGAGGGGGCGGTATTCACTTGCCTTCTAACACACTAGCACCTTGTACAATGCCAACAGAGATCGGCGGTACCTGATCGAACTTCTTATCGTTTTCTTCG TTGAATCGATTTCTTGTGTGAGTATAGTTATGTTCAAATAGCAATGAGTGGAGCAGCCCTTCAATTCTTTGAATGTGAACTATAAACTTCTTAGGATACT AATACACTCATGTTTAGGTTTTCTCCACTCATATGACCATTATAAGAGTTGCCTCAGGCACCATTTACCTTTTACCATCATTTCCCCTTCTATTTTGGTA ACTTCTGTTTTACAAATTGTGATTTGGTATTGTAAGCAATCATCTATGTTTTATTTGCATGTAACAACTAATGTCTTGATGTGGAAGTTCTTCTTAGTTG TAGATAATTCCGAGCGACAAGGATCTGTTGTCCCAAGCCAATAACGACTTGTCAC
• Tissue: pods
• Gene name: LI_gene_177679;
• Additional information: details;

Expression of Ll_transcript_402563

FPKM

• PAB: 3.8
• PNAB: 7.3
• PS1: 6.3
• PS2: 3.1
• PS3: 5.8
• PW1: 7.3
• PW2: 10
• PW3: 8.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_402563

• Blastp: Probable protein phosphatase 2C 60 from Oryza sativa with 72.84% of identity
• Blastx: Probable protein phosphatase 2C 60 from Oryza sativa with 72.84% of identity
• Eggnog: Phosphatase(COG0631)
• Kegg: Link to kegg annotations (4342084)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441719.1)
• Pfam: Protein phosphatase 2C (PF00481.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;