Ll_transcript_404255

• Id Trinity: TRINITY_DN50534_c2_g2_i1
• Name Transcript: Ll_transcript_404255
• Sequence: CTATTACTTGCATCAGGTTTCCAAATTCCAGAGCATGGTAGAAGGATCTAGAATAAGTTCTTAGCATACCGAAGTTGCACACATCCAACGGTCCATCTTT TTCACACAAAAAATTCCAGACTCTTCTTCAGCACATGATAAAATCACAGCCGTCCACTAATAAAAGCTTAAAATCAAGAAACTCATATAAATAGCGTGGA ATGGTTCTTCTTCTTTCATCTCATTTTTCCCATCTCTCATAATAATCAGATCTAGAATTCTCGTTCTTCATCGCTTCACCAAAGTAGGGTTTTCAATCAA ACAATCATGTTTGGGAGAGCACCGAAGAAGAGCGATAACAGCAGATACTATGAAATTCTTGGCGTTTCCAAGAGTGCTTCTCAGGATGATCTCAAAAAAG CTTACAAGAAAGCTGCAATTAAGAACCACCCCGATAAGGGTGGTGATCCTGAAAAGTTCAAAGAGCTGGCTCAAGCTTATGAGGTTCTGAGTGACCCTGA GAAACGTGAGATATATGATCAATATGGTGAAGATGCTCTCAAGGAAGGAATGGGTGGAGGTGGCGGTGGACATGACCCCTTTGACATCTTCAGTTCTTTC TTTGGAGGGGGTGGAGGTCCATTCGGTGGTGGTAGCAGCCGAGGACGGAGGCAGAGACGCGGAGAAGATGTGGTTCACCCTCTCAAGGTCAGCTTGGAGG ACCTTTACAGTGGGACATCTAAGAAGCTCTCCCTCTCTAGAAATGCCCTATGCTCAAAGTGCAATGGGAAAGGGTCTAAGTCCGGTGCTTCCATG
• Tissue: pods
• Gene name: LI_gene_177909;
• Additional information: details;

Expression of Ll_transcript_404255

FPKM

• PAB: 138
• PNAB: 60.9
• PS1: 25.3
• PS2: 73.7
• PS3: 44.3
• PW1: 22.4
• PW2: 37.1
• PW3: 49.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_404255

• Blastp: Chaperone protein dnaJ 2 from Arabidopsis with 87.8% of identity
• Blastx: DnaJ protein homolog from Cucumis with 86.5% of identity
• Eggnog: ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity)(COG0484)
• Kegg: Link to kegg annotations (AT5G22060)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413945.1)
• Pfam: DnaJ domain (PF00226.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;