Id Trinity | TRINITY_DN50547_c1_g2_i5 |
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Name Transcript | Ll_transcript_404477 |
Sequence | AAACAATAGAATTTGCTTAGTTGCATAGAAACTATTTGTAAGCACCTTCAAGGTATATATCTACTCTTTTCTATTTCGCAATTATTAATCCCTGGAAATT TGTGTTCTTCAATTATTTTCTTTGCGTTTATGGTGCCGATATAATATAGAATTTGGAAGATTTTGATGTTCTGATTCGATATTATTTGTGAGTTCTTCAA AAGCGATGGAAAAGCGATAATCGGATTTGTTATGCCCTTCTATCTTGATTCGATGATTAGGGTTACGGGTTGTGGGTTTCTTCTCCACGTGGAAGTAATT TTGAAACATTGTTCATGATTTTATTTTGTGAATAGTCACTCAACACAAGAGCTTTATGGAATATTTCTAAATTAATGTGACAATTTGATTCACGTGGGAA ACTATCTTCAGGTCGATTACGGAGGCAATACTTATATTCTATCGAAGTTCGATATAATGTTGTGTTTTGATACAAGATCGTTAATCGTATAGTTTGCATC AATTGATTCGTCGAATCGAATTATGGAGGTCTTTTTTAACCTGTAATATTATTTGTCTTCCAAGTTGTATAAATGCAAGTTTGTAATATTATTTGTCTTC AGAAAATTTTGATCTTGAAAATTGTTATAAACCATTAAACCGTTCTTGTTTATCAAGAAATTGAGGAGTGATATAGTTTTGTTTGGTTGTTTGTTTGTAT GTAGATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATAACTTTGGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAAGCCAAGATCCAAGAT AAGGAAGGGATCCCACCAGACCAGCAGCGGCTAATTTTTGCTGGGAAGCAACTCGAAGATGGTCGCACCCTTGCAGACTATAACATCCAGAAGGAATCAA CCCTTCATTTGGTTCTTCGTCTCCGTGGCGGTATGCAAATCTTTGTGAAAACCTTGACCGGAAAAACCATTACCCTTGAGGTGGAGAGTTCTGACACCAT TGACAATGTGAAAGCAAAAATCCAAGACAAGGAGGGTATTCCGCCAGATCAGCAGAGGTTGATCTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTCTT GCTGACTATAACATTCAGAAGGAGTCAACTCTTCACCTTGTGTTACGTCTTCGTGGTGGGTTTTAGCTACTTTGTGACATTGCTGAAGATCTCAGTGTCT ATGCATACTGATGAAAGTCCTTGTGGCCCCTTAAAAACTATGGTTTTTTGTGGTTTCTGGTTGAAATATTTTCTGTTATTTCCAAATTTGCTATTTTCTT ATGGTTTCTAAATACTTTTTTCAGTAGCAGACGGAAGAGCTATCAGTAGTAAAATATCGATACCCATCAATGTATATATTATATTTCCACTTTCAAATTT CAAATGAAAATGACAGCTTCAATGGAAGGGATATGAAATTAAATTAAAATGACGTTCGTTATACTAAACATGATAATTTCCTGGGACGGGATAGGAACGG GAAATAGGGCCAATCTGTTGAACAGTATATTAAACGACCATTTTGTTTTTTGTTGATAATTTTGTTTTTCTATAAACACCATTCTGGTTTTCAGGATTTA AAGAAATTAAAATAGTAATTTTCTATGATGTCAAGAGGCCAATATTAAAAAAAGCACCCCAATTATTGTGATTCATCTTTACTTTTGTTATATTTTTTAT CTCTGGGAAATAATTGGTCTACTTTATAAGATAGAAGCCCCTGCTTGCATTTAACCTGCATCTCGGCCAATCATTGTCATATAATGATGGTTGAGTAAAT GTGTTTATTGATGTCTTTAAACGCTTATGAATTGACCAAGTGTCCAAGTCTTGAATTTTTCTTCTCCCATGGCTAGATGGGGCTCGTGATCCAAATTCGA GTCCAGAGTTGTGACCTTGCATCGTCTTAACATTGCAGCGTGATGGATTTACTATCTTTCCAATCATGTAGGGTGCATTGTCAACCAACAATTCAAGAAT GTTATGAAGAAGAAAAAACCAAGACATATATGCAGAACACCCATTATGATATCCACATCTATTGGTAATGCTCACAGGATTGAAGGGATTCATAATGGCA ATACAACATAATAAGAATTCCAGTAGTTGAAAAACCTTTATTAACAGATGATAATACATCTCAAATGAAGGTGCTAAGAAGGGTGGGTTAAATGATAACT ATCATCAGATTCAGCACAATGTCAAAAGTTCTGCCGCTACATATCTTGATTAGGTTAGCATGGATTGTCTGGTTATCAATGCATCCCATCAGATGCATCC TTCACCAAGATCCTTAAGGATAGATCACATGTTTAATTATTGTTTTCTAAGCAGCTTAAAGTTTCCATTAGTCATCTAACAAAGTTGAAAGAAACAAATC TTGCACAAAACCAGATCTCCCAGCAGATTGTCTCATCCTTTTCTCCCTCTCTTCAACACTCAATGAAGGATCAAAACTGCAGAGAGACAGATCAAAGGGG TGATATTTAAGGGCATTCTTTAGTAAGGATTCAATACTAATGACCAGGTAACCAAAATTCATGAAAAAAGCACCTTGATTTCCAAATATGTACAGGTGCT GTATTCTTTGCAGAAGAATCTTCAGAACTTGTTACCATAGATTTAGAAATTTCTTCTGCTTCACAAGCAGGGAAATTTAAAATAAGAGAGGATAGGAATG GATCGGTAGCTGCATTAGATACTATAGAATTGTTTGACCGATATCCACCACTTCCGCCACCAAGGAGCACCTGTAAATGAGCCTCACGAAGATCTCGCCC TAAAAGAGACAATGTCTGACTGTTTGGAATAGCAACCCTTCTTAACCTGCGCCTTCTCTGTAAGTAATCCTCAGTTAAGAGTAGCAATTGACGTTTTCAT TTTTTAACTTAATAAATAATCAATCATATGAGCAGGTTAATTAGTTTGAATCAAAATAACAGTATAAAGGATATCTTAAATAAGTGCCCATGTTGTAGCG TTATGTGACTCAACATGTCCCGTGCAACTTTAACTGAGCATATAGGACAACTCTGCACAGAAGAAAAACGAAGGATGAGACTATCATAAGCAGAATTTGA GACCAGTTCAATCTTTGCAGCAGGAATGTAAAGTAACAACCATAGAAGAGAAAAATGGTATTCATTGGTCTTCAGCTTCTTTCGTTTTTCATTTACATAG TTGATTTGTACAGATGCTTCAAAAGTCGCAAATCACATCACATGTAATGGCTAAATTTAGCAGCCAGTCCATCTCAATGACCAAATGAATTTTAATGACA GCTAATGTTTTAGGTTGAGAGTTCAGAAGATTGTTGATCAACAGATTCATTTTTGCGAAATGATATAGAATCATTTCCCATTTGATTAAGTGGTTGTTAA GAACATACCTCCTGAATGGTTTTGGATATCTGAATTAAGAACAGGTATGCAATACACAAACAAAAAATGGACAAAGAGAATACTAATCGCGTGCTCAACA AGTATATAGGTAGAAAGAAAATGGTTTGAAGGCATAAAAACAAGAAGCCTCCATAATAACCTATTTCTTTCCATGAATTGCTTTTGATTGCTCACTCATC TTAAGAGATAACAAATTCACAGCTAGACCATATAAGAACTCTTCAAAGTGCATGCCTTCCTAGTCCGGAAAGTTTAAAAATACATGCTCGAGCTAATTTA GTCTCTGTAATTCTTCCTTTATTATAACCAAATTGCAAAGCATACGGAGAATAAGGGCAAAAGGCCAAAAGACAAAAGGAAACATGCTTATGCAGAATGC TAGAGTGAACTAGTAAATTACAAATGCATTACATGTCCATGTCAATGAAAATGTAGACCATGTCATGAACCTAAGGCAGGTCACTTGTCCGAGATCCTAA ATATCAATGACTTATAAAATATGTCATTATATCCCGGGGTGGTGCTTAGTGTTATAATGAGTGGCTATGGCTACCCCAAAATTCATAAAAGTCAAGTTTT TTACATGTATTTATTTTGTTCTGAAACAAATATAAATTCTTTAACTTGGCCCCCTAAATAAAGTATTCTTCTTCTTTGGTCTATTTAATAAAAATCTTCT AGTTCTGCCTCTGATTATATGCCATTTGTATTTTGCACACCTGAAGTCTCAACCATTTTTATGCCTGAAATTGTCATGACTGACATTATATCTGTGTTTG CAGAATTAACACTCTGATTCTCAATATAGTGATATACAATATGAGACAGAACATGTAAAACTCATTTAGCCACTGGCCCGCGTCAGATTTTTGTATGAAA AGCAAGCAATACAGAGAATTCTTCTGCCATAGGAATGTAAGGAAAAACACAGGTTCCCTCTTCACAACTGGCTAAAATGGCATTAAGGTGTAGCTTTCAA TCATTTGAGAAAACTAATAATAAACTTCCAATAATTTTâBLAST |
Tissue | pods |
Gene name | LI_gene_178017; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_404477
Blastp | Polyubiquitin 11 from Arabidopsis with 100% of identity |
---|---|
Blastx | Polyubiquitin from Hordeum with 100% of identity |
Eggnog | ubiquitin(COG5272) |
Kegg | Link to kegg annotations (AT4G05050) |
CantataDB | Link to cantataDB annotations (CNT0000474) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019445678.1) |
Pfam | Ubiquitin-2 like Rad60 SUMO-like (PF11976.7) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |