| Id Trinity | TRINITY_DN50547_c1_g2_i8 |
|---|---|
| Name Transcript | Ll_transcript_404484 |
| Sequence | AAACAATAGAATTTGCTTAGTTGCATAGAAACTATTTGTAAGCACCTTCAAGGTATATATCTACTCTTTTCTATTTCGCAATTATTAATCCCTGGAAATT TGTGTTCTTCAATTATTTTCTTTGCGTTTATGGTGCCGATATAATATAGAATTTGGAAGATTTTGATGTTCTGATTCGATATTATTTGTGAGTTCTTCAA AAGCGATGGAAAAGCGATAATCGGATTTGTTATGCCCTTCTATCTTGATTCGATGATTAGGGTTACGGGTTGTGGGTTTCTTCTCCACGTGGAAGTAATT TTGAAACATTGTTCATGATTTTATTTTGTGAATAGTCACTCAACACAAGAGCTTTATGGAATATTTCTAAATTAATGTGACAATTTGATTCACGTGGGAA ACTATCTTCAGGTCGATTACGGAGGCAATACTTATATTCTATCGAAGTTCGATATAATGTTGTGTTTTGATACAAGATCGTTAATCGTATAGTTTGCATC AATTGATTCGTCGAATCGAATTATGGAGGTCTTTTTTAACCTGTAATATTATTTGTCTTCCAAGTTGTATAAATGCAAGTTTGTAATATTATTTGTCTTC AGAAAATTTTGATCTTGAAAATTGTTATAAACCATTAAACCGTTCTTGTTTATCAAGAAATTGAGGAGTGATATAGTTTTGTTTGGTTGTTTGTTTGTAT GTAGATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATAACTTTGGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAAGCCAAGATCCAAGAT AAGGAAGGGATCCCACCAGACCAGCAGCGGCTAATTTTTGCTGGGAAGCAACTCGAAGATGGTCGCACCCTTGCAGACTATAACATCCAGAAGGAATCAA CCCTTCATTTGGTTCTTCGTCTCCGTGGCGGTATGCAAATCTTTGTGAAAACCTTGACCGGAAAAACCATTACCCTTGAGGTGGAGAGTTCTGACACCAT TGACAATGTGAAAGCAAAAATCCAAGACAAGGAGGGTATTCCGCCAGATCAGCAGAGGTTGATCTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTCTT GCTGACTATAACATTCAGAAGGAGTCAACTCTTCACCTTGTGTTACGTCTTCGTGGTGGGTTTTAGCTACTTTGTGACATTGCTGAAGATCTCAGTGTCT ATGCATACTGATGAAAGTCCTTGTGGCCCCTTAAAAACTATGGTTTTTTGTGGTTTCTGGTTGAAATATTTTCTGTTATTTCCAAATTTGCTATTTTCTT ATGGTTTCTAAATACTTTTTTCAGTAGCAGACGGAAGAGCTATCAGTAGTAAAATATCGATACCCATCAATGTATATATTATATTTCCACTTTCAAATTT CAAATGAAAATGACAGCTTCAATGGAAGGGATATGAAATTAAATTAAAATGACGTTCGTTATACTAAACATGATAATTTCCTGGGACGGGATAGGAACGG GAAATAGGGCCAATCTGTTGAACAGTATATTAAACGACCATTTTGTTTTTTGTTGATAATTTTGTTTTTCTATAAACACCATTCTGGTTTTCAGGATTTA AAGAAATTAAAATAGTAATTTTCTATGATGTCAAGAGGCCAATATTAAAAAAAGCACCCCAATTATTGTGATTCATCTTTACTTTTGTTATATTTTTTAT CTCTGGGAAATAATTGGTCTACTTTATAAGATAGAAGCCCCTGCTTGCATTTAACCTGCATCTCGGCCAATCATTGTCATATAATGATGGTTGAGTAAAT GTGTTTATTGATGTCTTTAAACGCTTATGAATTGACCAAGTGTCCAAGTCTTGAATTTTTCTTCTCCCATGGCTAGATGGGGCTCGTGATCCAAATTCGA GTCCAGAGTTGTGACCTTGCATCGTCTTAACATTGCAGCGTGATGGATTTACTATCTTTCCAATCATGTAGGGTGCATTGTCAACCAACAATTCAAGAAT GTTATGAAGAAGAAAAAACCAAGACATATATGCAGAACACCCATTATGGTATGATTCAATTTTAAAGAATCAAGAGAATAATAACATTTTAATTATGTAA TAGGCTCGCTAAAGCCAATTGTGTCATTATTTCTGATTGATAGATTTCTTGAATTCTGCTTTTTATCTTTTAATGAACGTCTCCAATTTGTTTATCAGAT ATCCACATCTATTGGTAATGCTCACAGGATTGAAGGGATTCATAATGGCAATACAACATAATAAGAATTCCAGTAGTTGAAAAACCTTTATTAACAGATG ATAATACATCTCAAATGAAGGTGCTAAGAAGGGTGGGTTAAATGATAACTATCATCAGATTCAGCACAATGTCAAAAGTTCTGCCGCTACATATCTTGAT TAGGTTAGCATGGATTGTCTGGTTATCAATGCATCCCATCAGATGCATCCTTCACCAAGATCCTTAAGGATAGATCACATGTTTAATTATTGTTTTCTAA GCAGCTTAAAGTTTCCATTAGTCATCTAACAAAGTTGAAAGAAACAAATCTTGCACAAAACCAGATCTCCCAGCAGATTGTCTCATCCTTTTCTCCCTCT CTTCAACACTCAATGAAGGATCAAAACTGCAGAGAGACAGATCAAAGGGGTGATATTTAAGGGCATTCTTTAGTAAGGATTCAATACTAATGACCAGGGA AATTTAAAATAAGAGAGGATAGGAATGGATCGGTAGCTGCATTAGATACTATAGAATTGTTTGACCGATATCCACCACTTCCGCCACCAAGGAGCACCTG TAAATGAGCCTCACGAAGATCTCGCCCTAAAAGAGACAATGTCTGACTGTTTGGAATAGCAACCCTTCTTAACCTGCGCCTTCTCTGTAAGTAATCCTCA GTTAAGAGTAGCAATTGACGTTTTCATTTTTTAACTTAATAAATAATCAATCATATGAGCAGGTTAATTAGTTTGAATCAAAATAACAGTATAAAGGATA TCTTAAATAAGTGCCCATGTTGTAGCGTTATGTGACTCAACATGTCCCGTGCAACTTTAACTGAGCATATAGGACAACTCTGCACAGAAGAAAAACGAAG GATGAGACTATCATAAGCAGAATTTGAGACCAGTTCAATCTTTGCAGCAGGAATGTAAAGTAACAACCATAGAAGAGAAAAATGGTATTCATTGGTCTTC AGCTTCTTTCGTTTTTCATTTACATAGTTGATTTGTACAGATGCTTCAAAAGTCGCAAATCACATCACATGTAATGGCTAAATTTAGCAGCCAGTCCATC TCAATGACCAAATGAATTTTAATGACAGCTAATGTTTTAGGTTGAGAGTTCAGAAGATTGTTGATCAACAGATTCATTTTTGCGAAATGATATAGAATCA TTTCCCATTTGATTAAGTGGTTGTTAAGAACATACCTCCTGAATGGTTTTGGATATCTGAATTAAGAACAGGTATGCAATACACAAACAAAAAATGGACA AAGAGAATACTAATCGCGTGCTCAACAAGTATATAGGTAGAAAGAAAATGGTTTGAAGGCATAAAAACAAGAAGCCTCCATAATAACCTATTTCTTTCCA TGAATTGCTTTTGATTGCTCACTCATCTTAAGAGATAACAAATTCACAGCTAGACCATATAAGAACTCTTCAAAGTGCATGCCTTCCTAGTCCGGAAAGT TTAAAAATACATGCTCGAGCTAATTTAGTCTCTGTAATTCTTCCTTTATTATAACCAAATTGCAAAGCATACGGAGAATAAGGGCAAAAGGCCAAAAGAC AAAAGGAAACATGCTTATGCAGAATGCTAGAGTGAACTAGTAAATTACAAATGCATTACATGTCCATGTCAATGAAAATGTAGACCATGTCATGAACCTA AGGCAGGTCACTTGTCCGAGATCCTAAATATCAATGACTTATAAAATATGTCATTATATCCCGGGGTGGTGCTTAGTGTTATAATGAGTGGCTATGGCTA CCCCAAAATTCATAAAAGTCAAGTTTTTTACATGTATTTATTTTGTTCTGAAACAAATATAAATTCTTTAACTTGGCCCCCTAAATAAAGTATTCTTCTT CTTTGGTCTATTTAATAAAAATCTTCTAGTTCTGCCTCTGATTATATGCCATTTGTATTTTGCACACCTGAAGTCTCAACCATTTTTATGCCTGAAATTG TCATGACTGACATTATATCTGTGTTTGCAGAATTAACACTCTGATTCTCAATATAGTGATATACAATATGAGACAGAACATGTAAAACTCATTTAGCCAC TGGCCCGCGTCAGATTTTTGTATGAAAAGCAAGCAATACAGAGAATTCTTCTGCCATAGGAATGTAAGGAAAAACACAGGTTCCCTCTTCACAACTGGCT AAAATGGCATTAAGGTGTAGCTTTCAATCATTTGAGAAAACTAATAATAAACTTCCAATAATTTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_178017; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_404484
| Blastp | Polyubiquitin 11 from Arabidopsis with 100% of identity |
|---|---|
| Blastx | Polyubiquitin from Hordeum with 100% of identity |
| Eggnog | ubiquitin(COG5272) |
| Kegg | Link to kegg annotations (AT4G05050) |
| CantataDB | Link to cantataDB annotations (CNT0000474) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445678.1) |
| Pfam | Ubiquitin-2 like Rad60 SUMO-like (PF11976.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |