| Id Trinity | TRINITY_DN50552_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_402020 |
| Sequence | AAGAGAAGAGAGAAGAGAAGAGAGAAGAGAAGAGAGAAGAGAAGAGAGAAGAGAAGAGAAGAGAGGAGAGGAGAGGAGAGAAGAGAGGAGAGGAGAGGAG AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGAAGAGAGACGATGGAGAGTCTGAAAGCTTCGATTCCAGAAGGCCTCAAACAAATGA TATCAGATAGCACCGTCGATAATCTTTCCACAACTTCTTCATATCTCCACCGTTTTTTCCTTCGTTTCAATCCTTTTCACCACATTAGATGATTACTGAA TTGGCGGACCCAAGCTATGGTTTATGTGGTAAGAGTAAGCACGATGCTTTGGAATCTAAGCAGCTTGGTAATCAGTGTTTTTTAGACAAAGATTATCTCC AGGCTTTGAATTTCTATACTCAGGCATTGCGCAGGGCTCCTTTTGAAGATGGCGACATGGAAAATAATCTGGTTGCCACATTGTATGTCAATCGAGCTAC TGTATTGCATAAAATGAGTCTTTTGGTGGAGTGTTTGCGAGATTGCACTCGAGCTCTCCAGATATGTCCAAGCCATGCAAAGGCATGGTATAGGAGAAGT CAGGCAAATGCTTCATTGGGAAATTATAAAGACGCTATTTTTGACCTAAATGTGGCTAAAAGTATGGAATCATCAATGGGTGGGAAGAGGAAAATTGAAA GTGAACTGAAAAGTATTTTAGACCAATGCAAGAGCACAAGTATGGCAGTAAAGCACAGTGGGAACTGCCTGAATACAGTGGATGAGATGCCCCAAATAAA GCTGAAGTCTGTCACGATTCCTGATAAAGGTAGAGGCATGGTATCATCGTGTGACATCTCACCAGGTTCTTTGGTTCATACTGAAGAACCTTCTGCTATG ATCATATCAAAGCAATGCCGGGAAACTCATTGTCATTATTGCTTGAATGACCTACCACCTGATAGAGTTCCTTGTATATCGTGTTCAATACCACTGTATT GCTCCCAGCAATGCCAGATAAAGGCAGGCGGGAGAATGTTCAGGATTTATCCAGAAGTTCATGCCATTCTTAAAAGTTTACCCAGAGATCTTGGAGAATA TGCTGCAGAAGTTATTCAAGTCAATGATTCTGAACAAGAAATTGAGAATATTTCTGAACATAAACATGAATGTCAAGGTGTAAATTGGTCTGCAGTACTG CCATCTGAAATAGTTTTGGCTGGCCGGATACTAGCAAGGCTTTTGCCAAAGAGCACATCTGAAGATATTAAAGACTTTGTAGAAGGGCTGGAGCTTTCTC ATTGTTATAAACATATGCCACCTGAAAGCAAATTGGACTCACATATACATGCCATTGTATTGTTGCACTGTCTTCAACACTCTAATAGCATTGTGTTTCC CATAGACGGAGTGTCTTTGTCACAGGTTGTCATAATTATTTCCCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAGTCAATAGATGCTCATGTG CGATCAGACCAGTTTGGAGAATTTCCATCTAATGCATATTTAACTAGTAATGTGGAACAGGTTAGAGTGGGAAAAGCTATTTATAAAACTGGCAGTTTAT TCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCACGTACTCTATGTATACGAACAACAAAATTTGTAGCAGCCGGGTGTGAGCTGGAGTT GTCTTATGGTCCACAGGTTGGGCTGTTGGTTTGTAAAGATCGCCTTGACTTGCTCAAAGATGAGTATGCCTTTCAGTGTCAGTGTACTGGTTGTTCAGAA GCCAATCTGTCTGACATTGTCCTTAATGCTTTCCATTGTGTCAATCCAAACTGTTCTGGCGCAGTGTTGGATAGCAGAGTCGTTGACTGTGAAAAGCAGA AAATCAAGCGCTTCCCTATTGCTGATGAAGCAGACAAGAACAGTGACATTTTTGAAGTGTGTATTCGTGCATTCAGCCAAAATGATGCCTCCATTCCTAT CCGACCTGGATACTGCTTGAAATGTGGTTCTTGCTGCGATTTGGAGTCTTCATATGCTGCAGTTTATAAAGCTTTAATATGCATAAAGAGGTATGCATCC AAATTGTAGCTTTCCTTTTTCCACTGAAAAATATAATTGGAGTTTGAATAGTTTCCATTTTGAAGCTTCCAAGATTAATGGTCCAGCTTCAATCCTTCAT GGGTTCATGTTAAACAATACATGTCTGCTTAATGTTTGAACACTTTACATTTAGAAAGATGATAATGATAGGTTGCAGGATGCAATTCTGTCGAAAGAGA TTTCAAATACTACTATTACAGAAGCTTCAAAATTTCTTCATTTACTGAGATCAAATTTGCATGCATACAACAAGCTTATTGCCGAGGTAGAGGACAACCT TGCCCAGGCTTTTTGTTTATTGGGAGAATTAGAGCTGTGTATGGACCATTGTAAAGCATCAATCCAGATTCTGGAAAAGCTATATGATCCTGATGATATT GTTATTGCTTATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGGTGATGCTACTGCTGTGGACAGCATAAACAGAATAGGTGATATCTTCTCAC GTTATTATGGATTTCATGCAGAATTGGTCTTCCCATATCTTAGATACCTTAAGGGAGAAATTGAAAAAAATTCAGTTGAGAGTGGCTAATTGCTACTCAA CAACCAATTGCTTAAGCATAGGGTGCTATGAAATGTGAACAGATTAAATGTCAGAACATTTGATGTGGAAGGTAACTCAAAGTTTGTCTATGCAATTTTG CAGTCAATACTTTTTGTGCACAGATAATATATGGAGGCTTTGAATACCTATACTCAAGTGTGTTTTCTCTTTTGAACTGAGAAAATTTGTTTATATTGAT ATATTCAAATTGAAAGGGGAGAAGATATATTTAAAGAATGTTGAAAAAATCTTAGTGGCTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_178056; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_402020
| Blastp | N-lysine methyltransferase SMYD2 from Homo with 24.37% of identity |
|---|---|
| Blastx | Serine/threonine-protein phosphatase 5 from Lycopersicon with 35.51% of identity |
| Eggnog | Histone-lysine N-methyltransferase(COG2940) |
| Kegg | Link to kegg annotations (56950) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019437284.1) |
| Pfam | SET domain (PF00856.27) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |