Ll_transcript_402028

• Id Trinity: TRINITY_DN50552_c0_g1_i9
• Name Transcript: Ll_transcript_402028
• Sequence: AAGAGAAGAGAGAAGAGAAGAGAGAAGAGAAGAGAGAAGAGAAGAGAGAAGAGAAGAGAAGAGAGGAGAGGAGAGGAGAGAAGAGAGGAGAGGAGAGGAG AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGAAGAGAGACGATGGAGAGTCTGAAAGCTTCGATTCCAGAAGGCCTCAAACAAATGA TATCAGATAGCACCGTCGATAATCTTTCCACAACTTCTTCATATCTCCACCGTTTTTTCCTTCGTTTCAATCCTTTTCACCACATGATTACTGAATTGGC GGACCCAAGCTATGGTTTATGTGGTAAGAGTAAGCACGATGCTTTGGAATCTAAGCAGCTTGGTAATCAGTGTTTTTTAGACAAAGATTATCTCCAGGCT TTGAATTTCTATACTCAGGCATTGCGCAGGGCTCCTTTTGAAGATGGCGACATGGAAAATAATCTGGTTGCCACATTGTATGTCAATCGAGCTACTGTAT TGCATAAAATGAGTCTTTTGGTGGAGTGTTTGCGAGATTGCACTCGAGCTCTCCAGATATGTCCAAGCCATGCAAAGGCATGGTATAGGAGAAGTCAGGC AAATGCTTCATTGGGAAATTATAAAGACGCTATTTTTGACCTAAATGTGGCTAAAAGTATGGAATCATCAATGGGTGGGAAGAGGAAAATTGAAAGTGAA CTGAAAAGTATTTTAGACCAATGCAAGAGCACAAGTATGGCAGTAAAGCACAGTGGGAACTGCCTGAATACAGTGGATGAGATGCCCCAAATAAAGCTGA AGTCTGTCACGATTCCTGATAAAGGTAGAGGCATGGTATCATCGTGTGACATCTCACCAGGTTCTTTGGTTCATACTGAAGAACCTTCTGCTATGATCAT ATCAAAGCAATGCCGGGAAACTCATTGTCATTATTGCTTGAATGACCTACCACCTGATAGAGTTCCTTGTATATCGTGTTCAATACCACTGTATTGCTCC CAGCAATGCCAGATAAAGGCAGGCGGGAGAATGTTCAGGATTTATCCAGAAGTTCATGCCATTCTTAAAAGTTTACCCAGAGATCTTGGAGAATATGCTG CAGAAGTTATTCAAGTCAATGATTCTGAACAAGAAATTGAGAATATTTCTGAACATAAACATGAATGTCAAGGTGTAAATTGGTCTGCAGTACTGCCATC TGAAATAGTTTTGGCTGGCCGGATACTAGCAAGGCTTTTGCCAAAGAGCACATCTGAAGATATTAAAGACTTTGTAGAAGGGCTGGAGCTTTCTCATTGT TATAAACATATGCCACCTGAAAGCAAATTGGACTCACATATACATGCCATTGTATTGTTGCACTGTCTTCAACACTCTAATAGCATTGTGTTTCCCATAG ACGGAGTGTCTTTGTCACAGGTTGTCATAATTATTTCCCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAGTCAATAGATGCTCATGTGCGATC AGACCAGTTTGGAGAATTTCCATCTAATGCATATTTAACTAGTAATGTGGAACAGGTTAGAGTGGGAAAAGCTATTTATAAAACTGGCAGTTTATTCAAC CATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCACGTACTCTATGTATACGAACAACAAAATTTGTAGCAGCCGGGTGTGAGCTGGAGTTGTCTT ATGGTCCACAGGTTGGGCTGTTGGTTTGTAAAGATCGCCTTGACTTGCTCAAAGATGAGTATGCCTTTCAGTGTCAGTGTACTGGTTGTTCAGAAGCCAA TCTGTCTGACATTGTCCTTAATGCTTTCCATTGTGTCAATCCAAACTGTTCTGGCGCAGTGTTGGATAGCAGAGTCGTTGACTGTGAAAAGCAGAAAATC AAGCGCTTCCCTATTGCTGATGAAGCAGACAAGAACAGTGACATTTTTGAAGTGTGTATTCGTGCATTCAGCCAAAATGATGCCTCCATTCCTATCCGAC CTGGATACTGCTTGAAATGTGGTTCTTGCTGCGATTTGGAGTCTTCATATGCTGCAGTTTATAAAGCTTTAATATGCATAAAGAGGATGCAATTCTGTCG AAAGAGATTTCAAATACTACTATTACAGAAGCTTCAAAATTTCTTCATTTACTGAGATCAAATTTGCATGCATACAACAAGCTTATTGCCGAGGTAGAGG ACAACCTTGCCCAG
• Tissue: pods
• Gene name: LI_gene_178056;
• Additional information: details;

Expression of Ll_transcript_402028

FPKM

• PAB: 0.1
• PNAB: 0.2
• PS1: 0.3
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0.5
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_402028

• Blastp: N-lysine methyltransferase SMYD2 from Homo with 24.37% of identity
• Blastx: DnaJ homolog subfamily C member 7 homolog from Dictyostelium with 32.19% of identity
• Eggnog: Histone-lysine N-methyltransferase(COG2940)
• Kegg: Link to kegg annotations (56950)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019437284.1)
• Pfam: SET domain (PF00856.27)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;