| Id Trinity | TRINITY_DN50554_c0_g1_i13 |
|---|---|
| Name Transcript | Ll_transcript_403667 |
| Sequence | GCTTATAAAATAAGTAAATGATTCTTTAATTCTTTTATCATATATATGTAAATGATTAATAAATTAATGATTAATAAATTATCTACATATAAAATATTTC ATATGTCAAATTACATGCTCATATTAATAAGTAAAAATAAGAAGAGTTTATAAAAATAGGTATGCATTATCTTTAATCGGGTCTAAGGTTGGGTTCCGGT TCAAAAACTGGCCCAACCGACATGTGGGGTCGTGTTAGCCTTTTAGTTCAAGAAAAAAACAATTTGACTGATATTTATGATCGGGTAAGGGACAAGCCTC ACTCGGTCCAATCTCACTGAGCTCACCCCCACTCAAGGGGGTCTTTATAAATGATAATCAATCCTTGCTTTTCTACATGTCTATTTAGTTCCTTCATAAT CATACTTTGCAAAGTATGACGCATGCTAGTCGGTAGTCTTATCCCTACCAAGGTGAACTCTGAATATATGCAATTAACTTGAGAGTTAAAAACTACAAAC AAAAAAAACACATCAATATATAACTATCTCATAGAGGACTTGTTTAGTGGTAATTTAGTAAAAGAAAAATGATGGACATCAAAGAATATTAAAGATTTTT ATATATTAATGTAGAGTTTATATATTCACTATATATATATATAAATCAATTAAAGTTGAACAAATAATCATAGGTAGATTCTCTCGAGGAGTGTGCAATG TTGTGCTGGTTCAAATCTTAAAACTCTAGGGTTAGTCTAACATACCAGAAAATGTTTGCCTAATAAATATATTCAAAGAGGAGTTTAATGTAAGAGAAAA AATATATATTCTTATGGTAAATAAATTTTATGCATTGTTACTGCATCATCTACCATTTAGGTTTAATTATCATTTACTTTTAAAAAAAATAATATAAATG AATGGTAAATAATATATCGAGTGTAAATAAGTTTTTACACTGACAGTATATATATATTTCATTTCTTAATATAAATGTTGTGTAAAGTATTGAGTACTTT TATTTAAAAATCCATTCTGAAATCTGAATCAATGAATAGTGATTGATAACATACGTTAACATAAAAAACTTTGCCCACTCTATTTTCTAATTGCGAATGA GGGTCTTATACTATATTTAGCGTGGATGTGGTCCTATTTGTATAGAATAATAATGTTTGGACCAAGTAGGATTGAATGTGTTTTATTTGGGTTGCTTAGC CCACTAATGAGGCTTTCTATTAAGTGTCACGGTGAAGACTTGCGTGTTACAGGGGGAGCGAAACCAGATGGTTGTGTGGTCATACCCGCCAACAGCAAGG CAACTGGCGGCCACCGTTACCGTGTTTGTGATTGGAGCTTCGCTCATCAGCGTAGGAGCTTATCTCTCGTACGCTAATATTGCTCCTCAGCAGGCTCGTG CAAAATCTCGCAGTGAAGCAATTAAAAAGCAACTCAGAAAGTTCCTCGATGATTGATGATGCTTTTTGTGATGTTGACTGGGCCTCTAACCCAGATGACA GGAAATCTATCTCAGGGGCTTGTCTCATTGTAGGCCCAAATATTGTTACTTGGTGGTCTAAAAAGCAGCAAACTGTTTCAAGATCAAGTACTGAGGAAGA GTACAGAAGCTTAGCACTAGCTGCTCAGGAACTTATTTGGATTGAATCTCTTTTATCTGAATTAAAGTTTCCTCATCAGTCACCTCTTATTCTGTGTGAC AATCTCAGTACTGTGGCCATGCCACACAATCCTGTCCTTCATCACAGAACAAAACACATTGAATTGGACCTATTCTTTGTAAGAGATAGAGTCCAATCCA AATTTTTGCAAGTCAAACATGTACCATCTGAAATGCAGACAGGAGATGCACTGACTAAACCTCTCTCTAACACAAGGTTTATGGCTATAAGGAAGCTACT TCAAGTGGTTGAAAGGTTTTCAACTCACCCACAGCTTCAGGGGGAATATAAAGATATATTGTTATGTTATTCTTTTGTTTAGCTTCTTGTAATAAAACTA ATCCTAGTTGATCAGTTTGTTCTTTTTAGTTGCTTAATTAGCTAGTACAGTTAATGGCAGTTAGTGACAGTTACATTTAGTTTAATTCAGTTTGCTATAA ATAGAAGCTAGGTATTCCCCTGTAATTGTAATCTGAAAAACTGAATCAATTCAATAACAGAGATCAGTTTTCTCTTTCCTTCTCCATCATTTTCTTTTCT TTACAAACCCTAGTCCATGAACTTTGGATAGATCTTTCTTTTTATCTCCGACATCTATCTTGAACTTCTAAGAGCGACTGTTTTTTGTTTGAATTGGTGA AACAAACAGTGTTGTCTTTCAGTTGAGTTTTGGTTTTCTGTTCTCAGAAAGCACGCCCAAGAATGTCCATGGTCCTTTTAGGAGCTAGACATTGGTGACT TTTGGCAGTTTTATTTCTTTTCTTGAGCTGCACTTTGCTGACTCTATTTTTGGTTTCACTTGAACTTCGCAATAAAAACATTCTTACCCTTCTCATTCTT CTGAGCCTTTTTTTTCCATCAGTGCGTCGCTTCTTTGGGAAGACCTAAACTGGCAATGAGATTTTCAAGGCCATCTCCTGTGACTCGTCTAATGTTATTT GCTATATTTAGTTTGGTAGCAGATTCTTGTTGTGCTGACAGTTTTGTTCATGGATCTTATGCTGCATTTTTCTTTGACTTTACTTTTCGTTCAGGATATG CTTAACTTAATCAGTTATGTTAGGTATCAAGGCCATACAAAATAGCTGAATTCGAGATTATATTTGGGGAGGGCGTCAGTAAACTGGGTTGCATTTTAGA TTGTGCAGAAATGATGGATGTTGTCTTAAAGAAAGGCTCTTGGTATAGCTATGGGGACCATCGGTTGGGGCAGGGAAGAGAAAAAGCAATACAGTATCTG AAGGAGAACACGCATCTTTTAGAAGAAATTGAAAAGGTAGTTCGATCATCCTTGTTAGATGGAACCAACCAAACAAGCCATGCATACACGAAGAATAGTC CAGTACTCTATCAAGATGATGATATTTTTAAGGAAAGTCAATGATAACCAAGCAAATTCTTGTCATGTCTGACTAGCTTGGGAGAAACACTGTGAGCAGA TAAAGCTGGAAAAATGCTTTCTTCACGACAAATGAAGATGGGGTTGGCTTTGATCATTAGACCATTTTTTTTGGTTCATCCTGTTCCATTGGTAAATGTT AATGAGAAGCATGAAAAATACAGAAAAGGGTTCAATGTGTGTCAATCAAGGCATCTTGATTTCTATATTTGGTTCCTATTTACTGCCATAATTGTTTCTT ATTGCATGCATTTTCTGTTAGTTTTTCCCCTTCTTTTGATCTTGTTAGTTGGGTGAGCCTACAATTGTTGAAGCTAGACCCAACACAGCTACAAAAACTG TCGTTCAGATACTCCCAGAGTTCCAGTAATCGGTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_178080; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_403667
| Blastp | Copia protein from Sophophora with 34.64% of identity |
|---|---|
| Blastx | DNA repair protein recA homolog 1, chloroplastic from Arabidopsis with 76.25% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019442250.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |