Ll_transcript_404596

• Id Trinity: TRINITY_DN50558_c1_g1_i3
• Name Transcript: Ll_transcript_404596
• Sequence: GCAAAACGCCACAAAATTTCAAAGAAAAAAAATAAGAAATGAAGGGGTGTGGGTCCTTTAGAATTTTGGAACCCTTTACTTCATTTGTATTTTCACGAGA ATTTTGTATTTTATCGAGAAAATTTTATCTCTCTCTTCTAGAACTAGAAACCCTTGAATTTGAAATTTGTTGATACCACTTATCAGACGCGCACTCGTGC CCATTTATTACAGTTTGTTGTAAAAGCCCCACCCACCACTTTTTTTTGTTATTTTTCATTTCATTCCTCTCTCTGTAATGCCCTTTTGATCAATTCAATC ATCCATTTCTGGTATTTCTACCATACTCTTCAAAAAATTTGTTTTTTATTTAATGAGTAGTGAAAGCTTCGTTTTTTACATATTTGGGTATCATCACCCG TGTTCCTATGAGATTGTATCTGTGTTGTTGTAGATCTGTGGTGGATTTGATCTGTAATATGATGATTTTTTTATTGTTTAATGTTAGGGTTTTAATAATC TGATGGCATGGAACAGTTTGTTTTGTTTAAGTGGGCAGCTGGTGATTGCTTTTATTAGCATGGCATCAAGCAATCCATTCTTTGACGATATACGGAGCCA TGCTGATGTTGATCCTCCTCAAAATGAAGAGTTGACAGATGTTAGTGAGTTAGTGAATGGTCCAACACAAACTGCTCTTAAACCTAATGGGACTGTTTCA AGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCTTGAATGCCATGTACCCTCCAATCCACCAGTGCTCAAATGGTCACACTATTTGCTCAGGTTGCA AACCCAGGGTCCATAACCGGTGCCCGACTTGTAGGCATGAGCTTGGCAATATCAGATGTCTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCCTG TAAATATCAAGGTTTTGGGTGCATTGGTATATATCCATATTACAGCAAGCTAAAACATGAATCTCAATGTGTGTATAGACCTTATAACTGTCCATATGCT GGTTCGGAATGCTCTGTTATGGGTGATATACCCTACCTGGCGTCCCATCTGAAAGAAGACCACAAAGTGGACATGCATAGTGGTAGTACTTTTAACCATC GCTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCAACATGGATGCTGACGGTATTGTTTTGTTGATTTTCTTTCTTTCTGCTTTCCGACTTGGCAAA TTCGCTACACTGTTGGTTGATTGTGTAATTTTGGGGCACGTTTGGAATTTTGGATTTACATGTTCGGATGTTCCTGTCATCATCAGTTGATAAGGATATA CAATTTAGGCACACACTACTTAGCCTTTTAACTTTCATTCACTTAAGAAAAATCATTTTGGCCGACACTGGAACATCTCAAAAGTTATATTATGAAGGAA CTATTTGTTTACAACATTGTCTTGTCTCCATAGGTGTCTGTCTATACAAGATCCTTATGCACTTAATTTTGTTTCTATGCAAATTTTGGGTTTTAGCTTA TATATGGATTTCGCATTGGTTTCTAGGTTTTCAGCTGCTATGGTCAGTATTTTTGTCTACATTTCGAAGCTTTTCAGTTAGGTGCAGCTCCTGTCTACAT AGCCTTTTTGCGGTTTATGGGCGATGACAACGAGGCAAAGAATTATAGCTACAGTCTAGAGGTGGGTGGAAATGGACGGAAAATGGTTTGGCAGGGGGTG CCGAGAAGCATTAGGGACAGCCACTGCAAGGTTCGTGACAGTTATGACGGTCTCATCATTCAAAGGAATATGGCTCTCTTCTTTTCAGGTGGTGACCAGA AAGAGTTGAAGTTAAGAGTTACTGGTAGGATTTGGAAAGAACAGTGACTGAAGGGAGATAATGTCCTTTTCTTGAATTAGCAGTCATATTGGACTTAGTA GTTGTAGTGCAACATATCTTTTAGTGATATATATCTTATAATTGTATTTTGTAATTTTTGAGGCAAACTCTCTTTGCTTATCCTTACATCAAATACATGA AGTGGAAATTCTACCTCTTATCATTATGATAATTACAAGCAGTGATGTAGATAGAACCTTAGTGTGCTCCTTCTATTATTCTTTTTCTTCTATGAACCTC AATAATTGAGAGCCATTAAACAAATTCTATATGCTTTTTGTTGTACTCTCAAGTGAACTTAAAGTTTTTGAACTAGAAAAATG
• Tissue: pods
• Gene name: LI_gene_178113;
• Additional information: details;

Expression of Ll_transcript_404596

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.4
• PS2: 0.2
• PS3: 0.2
• PW1: 0.7
• PW2: 0
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_404596

• Blastp: E3 ubiquitin-protein ligase SINAT5 from Arabidopsis with 78.21% of identity
• Blastx: E3 ubiquitin-protein ligase SINAT5 from Arabidopsis with 78.67% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (AT5G53360)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_014621185.1)
• Pfam: Seven in absentia protein family (PF03145.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;