Ll_transcript_402616

• Id Trinity: TRINITY_DN50561_c1_g1_i17
• Name Transcript: Ll_transcript_402616
• Sequence: ATGATTGTTTAAGCACCTTGGGGATAGAGATGCTGACTCACTCTTGTCTTGTTTTGTTTTGTTTTGTTTACTGTTTTTCAATCTTCATCAACTGCACCAA ACATAACACATAACAAGACCAACCACCTTAACTTTAAGGTACAACTTTGAGATACCCAAAATTTCCAAATCCAAGACTCACATATCAGTAATCATGTCAT CAAATTGTGTTAAGAGATTTGGAGGAAGATGGGTTTCTTTAGTTTCACACAGAGGCTTTTCTACATCTTCTGAGCAAGGTCTTAAGTCACTGAACCTTTT TTCTGCTATTAACCAAGCTCTTCACATTGCCCTTGACACAGATCCACGTGCTTATGTATTTGGAGAGGATGTAAGCTTTGGCGGAGTTTTCCGTTGCACG ACAGGATTAGCCGATCGATTTGGTAAAAGTAGGGTTTTCAATACTCCTCTTTGTGAACAGGTATTCATGTATTTCATGTTACCTCTGCTTTTCTTTTCTT TCTCTCATTCCCATTCTCCAATGTAAATATATATAATTAAGGTTTACGAAAACATGATTCTAGTATCTCGCGAGGGAATTCTAGAAAAGATATGTTATGA GAAGATAAAAGATCCGTTTCTAGAAAATGGTTTGATGGATTCTTCCACTGAAATTGTATCCAAGAATTTGATTATGCAATTCACTGAATTTCTTCTTTTT GTTGCTAAGTATCTTTTTATTCATTTCTGTATTGTTTAGTTTTTCCTTTAGCACTGATTTAATTATCTTGTACCGAAATACTATTCGTAGGGTATCGTTG GCTTCGGCATTGGTCTAGCAGCAATGGGCAATAGAGCAATAGCAGAAATCCAGTTTGCGGATTACATTTATCCGGCTTTTGATCAGATTGTCAATGAAGC TGCAAAATTCAGATACCGGAGCGGGAACCAATTTAATTGTGGTGGTTTAACAATCAGAGCCCCTTATGGAGCTGTTGGCCATGGTGGGCATTACCACTCG CAATCGCCCGAGGCTTTCTTCTGCCATGTTCCCGGTATTAAAGTATGAATCGTTCATTTGGACTTCATAACCTTATTTTTATAGCTGCAATTTTTCTGCA CTCGAAGGAGTTACTTTGCAATGAATACTTGGATTACTTGGTGTATATGGAATATTATGTTTGAAATTTACTCTAATTTTGGCGTCGTTCGATCCATGTA GCCGATCATACCTAGCAGGATAAAGGTTTGGTTGTTGTTGTTTGTTTTTTCGGTTTGCTGGGGTAATCAATTGTATGTGCTTGCAAAATTGTTCAAAATA GTGAAAAGATTGATCCTATTAACATAAGTTATATGAAGGTGGGATAGTAGAGACAGAAAATCGTCGCGAAGTAGTGGAGTAAATTCTTACATTGGTTTGT AATTTAGTACGGCGTCTTGAAAGATAGCAGTGCTATGGTTGATAAAATACAGGCTGAAGACATCTGCATTTAAATGCAAACAACCTTAATCTGGTCGCGG TTGACAACAATGAAGTTTGGTTTAAAGTTTTACCTTCCCAAACCCCGAAATCCCGAACCGCTTGAGGTTGGAAAACTGAACCACATCCCTGATCCCACCG GTTTTCAGTTTTCCCGACCCAATCCCGCTTCATCTCCGACCCCGACACACATATAAGGGTAGTTTCGTAAAACCCTTATATATAAAAAGTCTCCACTTTA CTATAATATGTATATGTGTGTGTAATTAAGGGTTCTGGACGAGTATCACCAAATTAGAACCCGAACCTGTCGGGGATGAAAAAACAAACCCGAACCCGAA CCCAGTCAAATCCAGTTTTCCCTGGCAAACTTGGTATAGTTCGGAGGGGTACCCAAAAATTTGAGTTATGTTGCCATCCCTAATAGAATTAGGATTGTGG ATAATTAAATGAAGGAAACCGGGTAACTGAACGCCTCTCGATGGTAAGTCCGGAGAAGCATGTGGCTTAGATTGCGATAGGTGGTGTTTAAGGACTGAAA TTTGCTTTATAGGGTGCTTTGGACATTTATTGAAAAAATTAGTTTCTGATATAAGAACTTTCAGTTACATTCTGTCAAATTCATATGAGGTACATGGTTG ACACATTTTCCTTAAATCTCTTACAATCGTTTCTCTTATAGGTAGTTATTCCTCGAAGTCCGCGGCAAGCGAAAGGGTTATTACTATCTTGCATAAGAGA TCCAAATCCTGTTGTATTTTTTGAACCAAAGGTTGCATTCTACCCGAATAATCTTACTGAATTGTGTGCACATATTTATGGTATGTGAGAATTTTGAAAT TTTAATCATGTGAGTCTTGGTTTCAGTGGCTTTACCGTTTGGCCGTTGAAGAAGTACCCGAGGATGAATATATGTTACCTTTATCCGAGGCCGAGGTATA TAAGTCACACTAAATGCTAGAAGGGAAAGAAGTTCTAAGCAATATTATATATACTTATGAACTCGATACGATGAAACAGTTACCCTGGCTGAATATTGAA ATATGTGCACAGGTGGTTCGGCAGGGTTCGGATATTACGCTGGTTGGGTGGGGAGCTCAATTAGCAATAATGGAACAAGCTTGTCTTGATGCTGAGAAAG TAAGACTCTTCTTTTTACACTGAGAACATGGATGCTGCATTATTCACCCAATGTCTGATTTGATAGTGTAACTACATACTTATTTTATTTGGTTTCCCGC GAATTCCCACCGGAGGGTAGAACTAATCCCTCGAGCATAGCCAGGCTTGTCCTTCCCACTAGTACTTTCTCCCGGTATTGAACCATGGTTCTCTCATGCG GCCGTAGTGCGCCTCTACCACGTGTAACTACATGCTCACACCTCTCTTATTTTTCTAATCAATTCATACACTATTACACCACTTAATGAATTAATCATAA TTCTGATATATACTTCAGAACAGAGTCCTAATATATCTGTCATAGTATATACTTATCTATGTTGGAATTGTAATGTTAATGTGAGATTCTGCAGGAGGGA ATTTCTTGTGAACTGATAGATCTGAAGACACTAATACCTTGGGATAAAGAAACAGTGGAAGCCTCAGTTAAGAAAACTGGAAGATTGCTTATTAGTCATG AAGCTCCTGTAACTGGAGGTTTTGGTGCCGAAATCTCAGCTTCCATTGTCGAACGCTGCTTCTCAAGGTTAGAAGCACCTGTTGCAAGAGTTTGTGGTCT AGACACTCCTTTTCCACTGGTTTTTGAACCCTTCTACATGCCAAACAAGAACAAGATATTGGATGCAATCAAATCAACTATAGATTATTGATGAGCTTCA TCATAACTTTTTGGCCTTTTACATGATCTTGAAATCAACATCATAATGATCATGTTATGGGCTAGAGAATCATTAGTTTGATTCAGACCATGAAGTTAGG AAAGAAACATAAATTCATTGTGCAATTTTCTCCAAATGTAAAAAATTAAACATCACAACATAATGGCCATGTAGTATATGTTTCTTTTACAACACCCTTT GTGCTAAGAAATGTGAAATATTTGAGGAAATGAACTCCTCTCCAGTATTGGGACACGAGGATAAGATGTTTTTATACGTTATAATTGAATCCAGTACTGA ACTCTCCAGGACTAAACAGGAGCTCAATCTATATTTGAGGGGAATGGTAATAAATGGATCCTTTCGGTTCCTTAAACCCCAAGTCAAAGACTTCCACAAA ACTGTATCCATTTTCATGAACATTTCATGTAATATCTCCTACCTATAAGATCAACTGGAAATCCATAGATGTCAAGTTTTGGTCCCATGCCATGAACTTC TTTTGGTTGTCTCTGTCAGTGTTGAACATATATTGTATTATAGTTTTAAACACTCTTAATCGTATTCTATTAGCGACAACAACCAAACCTTATTCTTAAT ATGTGAGGTCAGCTCCTAATCATATTCTGTAACATTTTATATTTCTTTTATCGAATCCTCATAATAG
• Tissue: pods
• Gene name: LI_gene_178140;
• Additional information: details;

Expression of Ll_transcript_402616

FPKM

• PAB: 10.4
• PNAB: 2.7
• PS1: 4.1
• PS2: 3.7
• PS3: 4.5
• PW1: 6
• PW2: 6.3
• PW3: 5.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_402616

• Blastp: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial from Arabidopsis with 73.17% of identity
• Blastx: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial from Arabidopsis with 89.9% of identity
• Eggnog: Dehydrogenase, E1 component(COG0022)
• Kegg: Link to kegg annotations (AT1G55510)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019448466.1)
• Pfam: Transketolase, pyrimidine binding domain (PF02779.23)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;