Id Trinity | TRINITY_DN50561_c1_g1_i5 |
---|---|
Name Transcript | Ll_transcript_402604 |
Sequence | ATCTGATTATAAGCTCTTTATATATCTTAAATGGCAGGGCAATAGAGCAATAGCAGAAATCCAGTTTGCGGATTACATTTATCCGGCTTTTGATCAGGCA TGTTCCCTTAACATGGCTAGAAATTATTCAAAGCTTCGGTTGATAGGTAATTTCCCATTTCTTGTTTTCAGATTGTCAATGAAGCTGCAAAATTCAGATA CCGGAGCGGGAACCAATTTAATTGTGGTGGTTTAACAATCAGAGCCCCTTATGGAGCTGTTGGCCATGGTGGGCATTACCACTCGCAATCGCCCGAGGCT TTCTTCTGCCATGTTCCCGGTATTAAAGTATGAATCGTTCATTTGGACTTCATAACCTTATTTTTATAGCTGCAATTTTTCTGCACTCGAAGGAGTTACT TTGCAATGAATACTTGGATTACTTGGTGTATATGGAATATTATGTTTGAAATTTACTCTAATTTTGGCGTCGTTCGATCCATGTAGCCGATCATACCTAG CAGGATAAAGGTTTGGTTGTTGTTGTTTGTTTTTTCGGTTTGCTGGGGTAATCAATTGTATGTGCTTGCAAAATTGTTCAAAATAGTGAAAAGATTGATC CTATTAACATAAGTTATATGAAGGTGGGATAGTAGAGACAGAAAATCGTCGCGAAGTAGTGGAGTAAATTCTTACATTGGTTTGTAATTTAGTACGGCGT CTTGAAAGATAGCAGTGCTATGGTTGATAAAATACAGGCTGAAGACATCTGCATTTAAATGCAAACAACCTTAATCTGGTCGCGGTTGACAACAATGAAG TTTGGTTTAAAGTTTTACCTTCCCAAACCCCGAAATCCCGAACCGCTTGAGGTTGGAAAACTGAACCACATCCCTGATCCCACCGGTTTTCAGTTTTCCC GACCCAATCCCGCTTCATCTCCGACCCCGACACACATATAAGGGTAGTTTCGTAAAACCCTTATATATAAAAAGTCTCCACTTTACTATAATATGTATAT GTGTGTGTAATTAAGGGTTCTGGACGAGTATCACCAAATTAGAACCCGAACCTGTCGGGGATGAAAAAACAAACCCGAACCCGAACCCAGTCAAATCCAG TTTTCCCTGGCAAACTTGGTATAGTTCGGAGGGGTACCCAAAAATTTGAGTTATGTTGCCATCCCTAATAGAATTAGGATTGTGGATAATTAAATGAAGG AAACCGGGTAACTGAACGCCTCTCGATGGTAAGTCCGGAGAAGCATGTGGCTTAGATTGCGATAGGTGGTGTTTAAGGACTGAAATTTGCTTTATAGGGT GCTTTGGACATTTATTGAAAAAATTAGTTTCTGATATAAGAACTTTCAGTTACATTCTGTCAAATTCATATGAGGTACATGGTTGACACATTTTCCTTAA ATCTCTTACAATCGTTTCTCTTATAGGTAGTTATTCCTCGAAGTCCGCGGCAAGCGAAAGGGTTATTACTATCTTGCATAAGAGATCCAAATCCTGTTGT ATTTTTTGAACCAAAGTGGCTTTACCGTTTGGCCGTTGAAGAAGTACCCGAGGATGAATATATGTTACCTTTATCCGAGGCCGAGGTGGTTCGGCAGGGT TCGGATATTACGCTGGTTGGGTGGGGAGCTCAATTAGCAATAATGGAACAAGCTTGTCTTGATGCTGAGAAAGAGGGAATTTCTTGTGAACTGATAGATC TGAAGACACTAATACCTTGGGATAAAGAAACAGTGGAAGCCTCAGTTAAGAAAACTGGAAGATTGCTTATTAGTCATGAAGCTCCTGTAACTGGAGGTTT TGGTGCCGAAATCTCAGCTTCCATTGTCGAACGCTGCTTCTCAAGGGTATGCTCCAACCTTTATGTATATAACTTGGCATGTTGTCCATGACTTTCGATG CTACTCTGTCCACACTATAAAGGGCGGGCCGGTGTAAGAGGCTCCTACTTAGTGGAGTCTGGGCAGGGTAGGTATATGCAGCCTTACCTTCGCAATCAGA AAGACTGTTTTCAGGATTTGAACCCGAGACTTCATGGTCACCAAGCAATAACCTACTATTGCACCAAGCTCAAACTACGATCCCCTAAAATTAAACAAGC ACATGTAACATTGATTTATGTCATAGGAGTTTCTAGCACAATATTGCATTTGTGAAGATAGGTAAATAAAAGAGGATATGGAAATAGAAAAGGGTAGGGC TTTGGGGCAAGACATTTTTGAAAGATGGAGTCAAGAACATAAGAGCATACAAGAACAAGCTTAGCCTAGTGATACTCTCACAAACATATTTTACTCTCAT TGAGTCGCTACCAATAAGCTGGTAGTGACTCAATGAAATCAATGACTATAAGTTCCTAAGGTCATGAGTTCGAGTCACAGAGACTCCTTATTGGAGGAAT AAGATATTGCATGGAGTATTTAAGCTTAAGGGTGGTACAGAAATGGACCGAGAGGGGTCGCATGTCAAGGCTGCAGTGTTACAGAAATGGTTATACATTT ACCTTCTAGAATTGAATTCAACTTGGACATGTCTCTCAAACATGTCTTTCTCTTTTGTTTGTGGTGCAGTTAGAAGCACCTGTTGCAAGAGTTTGTGGTC TAGACACTCCTTTTCCACTGGTTTTTGAACCCTTCTACATGCCAAACAAGAACAAGGTAACTCATTTTCTTACCTTAATTTTCTTTCACAGAACACAACA TTTGTAGCATAATCAAACTGTCTAAACTAACACAAGTTTCTGTCACTCATCTCATGCAGATATTGGATGCAATCAAATCAACTATAGATTATTGATGAGC TTCATCATAACTTTTTGGCCTTTTACATGATCTTGAAATCAACATCATAATGATCATGTTATGGGCTAGAGAATCATTAGTTTGATTCAGACCATGAAGT TAGGAAAGAAACATAAATTCATTGTGCAATTTTCTCCAAATGTAAAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_178140; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_402604
Blastp | 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial from Arabidopsis with 84.62% of identity |
---|---|
Blastx | 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial from Arabidopsis with 86% of identity |
Eggnog | Dehydrogenase, E1 component(COG0022) |
Kegg | Link to kegg annotations (AT1G55510) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019448466.1) |
Pfam | Transketolase, C-terminal domain (PF02780.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |