| Id Trinity | TRINITY_DN50568_c4_g4_i1 |
|---|---|
| Name Transcript | Ll_transcript_402308 |
| Sequence | TTTTAAGGGAGGCAGAGAAGCTGGTTGCAGTTAAGATTCATCCGATGACAATAATATCAGGTTCATTTCTTTGTTTACTGCTTTCATGAAGCAGATTTTG CTGTGTTTTAAATGCTGCTTACTTTCTGGTAACAATTTTATTGTCTCACATTCTGAGCATTAGTCAACTTACCTTAATAAGTAATTTCATGTAGTAAATG ATAAGCCTCCAGTTACGAGGGTATTTCAGAGAAGAAAGAAAGGTGACCAGGGTACTTTAGGAAAGAGAGGAAATGAGCATGTTGCACATGACTCTAACCA ACAAGACACTTGGCAAGATATGAATGGGTAGAAGATCATGGAATCAAGGAAGAGAGGGTAATATGAGGAGAAGGAATAGCATACTGTCAGGGGGAATCAT TTTAGGGAATTGTGGGGTGACTCTTGTCACAGGATAGAGAGAAATTATTCCTTTGGTCGTTCTATTGCACTTTCTGCATTCTTAACAGCTTTCTTATTTT CTTATTATACTCTTGCAATTATCCATGATAGCAATGTACAATTTCTGCACTGTTTAATACACAATTCTGCACTGGTTTATTTCTATTGTTGTTCTATTTT CTTTCTTAAATTGTTGGTATCTATCAAGTTGGTATCAGAGCTCCCGATCTTGGGAGCATCTGGATGGTATCAACACGAATGGAGAATAGGCTGGAAAATG TGGAGAAAAGGTTGGAGGGAATACAATCTTCTCTTCAAGAAACTTTAAGGCAACAAATGGAGATGCTGATGAAAACGGTGACAGATCGTTTGGAGGAGAC GGTAGGAGAAATAAGGGGACTAGGTAGAGAAGAAGCAGGGGAAAACAGTAATCGTGATGGGAGGCAATGGAGGGGTGGGGTATACGACAACGAAGAGAAC CGAAGAGAGGAGAGGGTGAAGAGAGTAGAAGTACCATATTTCACTGGAGAAGATCCCCATGGATGGGTTTATAGAGTGGAACGCTATTTCGAAATCAATC GCATTCCAGAGGAGGAGAAGGTAGACACTGCGGTGGTATGTTTGGAAGGGAAGGCTTTAAATTGGTATTAGTGGTGGGAATCCCGCATGATGGTAGCAGT GCAATGGCCATTATTCCGTCAAGCTTTGATGAGTAGATTTCAGGTGTCCTCGTCGGAGAATCCCTATGAAGCGTTGATGGGGTTGAAGCAAAGAGGAACA ATCATGGAGATTTACATGAGTTAATGGAGGTGGCACAAAAGGTAGAAGAAAGGAATCGGATCTTGGGGCGGTCATTGGGGTATTCAACCCGAGGAAGTGG AACCGGGTTCAATAAAATTGCCCTATCTGGACGCTGGACCGGGTCAAATGATTTTAAAAATTCATCTCATGAGGCACAATCACATGTGGGCCAAAAAGAA AACTCATGAGCCCAATGGGGACAAAATGAAAACACAGACACAAAGGGAGGAGTGGGTGCACGTGAAAGAGAAAATTTTAGCAACCATAAAAGGGGAGTAG GGTTCAAAAAAATAAGAAAGGAAGAAGAAAATGGGAAGAGAAGAAGAAATCTATGTTTCCGTTGTGACGAAAGTTATTTCCCAGGTCATATCTGCAGCAA CAAACATCTTCATATAATCCTACTTGCACATGGTGAAGAGAAAGAAGAAGAAGAAGAAGAAGGTGAACAAGGGGAGGAAATAGTAGATGAGTTGAATATG CAGCTGAACGTTAGTAGCATTGCTGGAATGACTTCAAAAAATTCACTCGAGCTATGGGGGACAATCAAGGGACGCAAGGTTATAGTAATGGTTGATTCCG GAGCATCCCACAACTTCCTATCACCCGGAATAGTTGAAGAATTGAAGATTGCCACTGAGAAGACGTCGGGTTACTTCGTGGAAGTGGGAAATGGACAGCG CCTAGGGAGTCAAGGGGTCTGTCGAGAGGTTGAACTTCAACTCCCTACACTGAAGATTATCCAGGACTTCTATCTGTTTGATTTGGTTGGTGTAGACGTC ATTTTGGGATATGAATGGTTGAAGAGTCTCGGTAAATTCAGCGCAGATTTGGGGCGTTATTTGCTAGAGATTCAGGATAATGGGAGGACCATTGAAATTA GGGGAGACCCAACTTTATCCAGAACAGTGGCCTCTGTAAAAGCCATAATGAAGGAGATGCGAAACGAAACAGAAGCTTATTATGTGGAGTTTGGAATGAT GAGTATGATGTGTTCATCGGAGCTTATTATTCCGGGTAGTGTGCAGCATCTTATCCAGGAATTTGGTGATATTTTTCATGAACCAACAGGATTGCCACCT CAAAGACCGTGTGATCATGCCATTATACTGAAGGATGGGGCAGAAATTCCACACATACGACCATATAGGCATCCTCATAGTTACAAGGAAGAAATTGAGA AATTTGTGAGGGAGATGTTAGCAGCAGGTATGATTCGGCCCAGTGTAAGTCCTTTCTCAAGCCCTTTGATCTTAGTAAAGAAGAAGGATGGAGGATGGCG GTTCTGTGTTGACTATAGAGCTCTCAATAAGGTCACTGTTCCCAACAAGTTTCCGATCCCCATAATTGAGGAGTTGTTGGATGAGATGGGCGAAGCTTCA TTTTCTCTAAATTGGATCTGAAATCCGGTTACTACTAGATTCGTATGAAGGAGGAAGACATTCCCAAAACCGCTTTTTGCACCCATGAAGGTCATTATGA GTATGTGGTGATGCCTTTTGGGCTCACCAATGCTCCCTCAACTTTTCAAGCGCTCATGAATGATGTTTTCAGGCCATATTTGAGGAAGTTTGTGTTAGTC TTCTTCGATGATATCTTGGTTTACAGTAACAACATTGTATCGCATTGTGATCATTTGCGGAAGGTGTTCGAAACGCTAAAGGAGCACAAGTTGTGGGTGA ACTACAAGAAGTGCTGTTTTGGGGCTATCCAATTAGAATATTTGGGACATCTCATTTCTGGAAAGGGAATTGAAGCTGATCCGGAAAAAATTGCAGCAAT GAAACAGTGGCCAATACCTAGAGATATTCGTGGGTTGAGAGGGTTCTTGGGTCTCACGGGGTATTATCGCCGGTTTGTCAAAGCTTATGGGATTATGGCT AAACCTTTGACACAACTCTTGAAGAAGAACAACTTCAAGTGGTCAACAGAAGCTCAATGTGCATTTGAAGAACTTAAGGCTGCCATGGAAAAATTACCCA CGTTAGCTCTACCCAATTTTAATGTGCCATTTGAGGTTGAGACAGATGCGTCCGGATTTGGCATTGGTGTTGTCCTTATGCAACAAGGCAGGCCGTTGGC ATTTGTGAGTCAAGCTTTGTCCGAGAGAGCAAGGATGAAATCGGTCTATGAACGTGAATTGATGGCTATTGTGTTTGCGGTGCAAAAGTGGCGACAATAC TTGTTGGGTCACCACTTTATTATCCGGACCGACCAAAAGAGTCTTAAGTTCTTATTGGATCAACTCGTGTTGGCGGGGGACCAACTAAAATGGGTTACCA AGTTGATGGGTTTTAATTTTGAAATCCAATACAAGCCTGGGTCAGAAAATAGAGTGGCGGATGCATTGTCACGTGTTATGGAGTACAAATTAATTTCTAT GGTCACCAATATTGATCTGGTTGAATTAGTGGATGAGGTTCTAGCTGATGATAAGTTGCTGCGGATTTTGCAAGAGGTTGTCCAGGACCCAAATTCTCAT CCAATGTACACTGTCTCTAAAGGCTGTTTGTGGTACAAAGGAAGACTGGTTTTGCCTAGCACCTCAACACGCATTCCAGTGTTGCTAGAGGAGTTTCATT CATCGCCTTGGGGAGGGCATTCAGGGGTAGTTCGTACTTATAAACGGATAGCCATGGCATTTCATTGGAAGGGAATGAGACGTGACATAGAAAAATTTGT AACTGGTTATGACAAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_178223; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_402308
| Blastp | Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 44.59% of identity |
|---|---|
| Blastx | Transposon Ty3-G Gag-Pol polyprotein from Saccharomyces with 33.12% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_015964281.2) |
| Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |