Ll_transcript_403858

• Id Trinity: TRINITY_DN50593_c0_g3_i9
• Name Transcript: Ll_transcript_403858
• Sequence: TATGATAACATCACGAGATTTTGAATACTCCCTTATCTTCCTTTGATAAAAATGATCCCACATATTCCAATGTTAAATATTACGAGACCAAATAGGACTT TTGACTTGTTCATAATTACGGGAATATGCCATTCTCATTGTTTTTTCTTCCTAATAAATACAACACAGACTTTGGGCCTGAAAACAGAAAAAACCCTTTC TATTACTCTGCAGAAAATACGTATTTTTTCTGTGCCTAGGTTTCACTTTTCCCATCAAAATTTCCCAATTCTCTCATCAGAGAAAATTTTGAATTGTAAT GGGAAAAAAACCAGCGACGACGGAGGAGGAAGAGGCATTGCCGGACCACCTGCGATGCGGGCGAACAGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTG AAGGAGAATTTGAAGCTATGCGAGATTCACTACCTTCAAGGTCGTCATCGCCAGTTCAAGGAGAAAGTTCCAGAATCACTGAAGCTTCAAAGGAAGCGCA AGAAGAATAAGAAGGACCCTGTTGTCAATTTGAGCAGCAATGCAGAAATTAGGGCACAGAGAATGAAGAAAAAGCGCAAGATTTCAGAGGCATTGGGTTC TAAGAAGAAGGGGTTTAAGTTGAAGAATGGTGATAGCAATATGCAGTTGGAGCTTATAAGGATGGTTTTGCAAAGAGAAGTTGAGAAAAGGAAGAAGACA AAGAAGATGAAGAAGGAAAAGGAGGAAGAGGATTATGATGACGAAGAAACGGAATCGGATTACAATGAAGAAGAGTTGAAGAGAGAATTGCCTAATGGTG TAATGGCAATATCTCAAGCTTCAACACCTCATCATTATAGCAATGTGGGTCCCGGATCACAATCCCATTGTGATGTGAAAGTTGGTGTTGATTATAGAGC AGTTACACCACGTTACTTCAGGTCCAAGAATGTTGATAGAATCTCTGGTGGCAAGTTGCAGGTTGTGCCATATGGACCAAACTTGAAAGGTAAGGGTCGG AGGAAGAAGTGTCATTGGTGCCAGAGAAGTGATTCTTGGAAACTTATAAAGTGTTCGAGCTGTCAGAATAAGTTTTTCTGCATGGATTGCATTAAAGAAG GGTCTTTTGACACTCCGTATGAAGTTAAGAAGGCGTGTCCAGTTTGTCGAGGGACTTGCGTCTGTAAGGACTGCTTGTCAAATCAACGTAAAGACAGTGA AAGTAAGGAATACTTAGCTGGTAAAAGCAGAGTTGATAGAATATTACATTGTCACTATTTGATCTGTATGCTCCTTCCGGTACTAAACCAAATAAGTGAT GAACAGAAAGCTGTGCTAGAAACAGAAGCAAAAATCAATGGGAAAGAACTTTCCGATACTCAGATGAAGCAGGTTGACTTTGGCTACACTGAGAAAATTT GTTGCAATCACTGCAAAAGACCTGTTTTGGATCTCCATAGAAGCTGTCTTAGTTGTTCATATAGCCTTTGCTTAACTTGCTGTCAGAAATTAAATCCAGG AAGGACTTCTGGAGGAACTAACTCATCTATGTTTAAGCTACCTGATAAGTTGAAAGCTTGCATTTCCATGGATGAGAAGTCCATTTCCAGTGGCAATTTA ACTGGTACTTCAGTATTGCCTGAGTGGACAAATTGTAATGGTATTGATAATATATCATGCCCGCCTACAGAGCTTGGTGGTTGTGGTAACAGCCACCTTG ATTTGAGATGTACCTTTCCCTTAAGTTGGATCAAAGAGATGGAAGTAAAAGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAG TTCAAGCTGCTCACTCTGTTTTGACACAGATCACAAAAGTAACAGATTTAAGTTGTTGCAAGAAGCAGCTTTCAGAGAAGATTCAAATGATAATTGCTTG TTTTATCCCACAGTTTTGGATATCAATGGGAATAACTTTGAACATTTTCAGAAGCACTGGGGAAAAGGCCATCCTATGGTAGTGCGAGATGTGCTCCAAA GTTCATCGAACCTTAATTGGGATCCACTGATCATGTTCTGTAATTATCTTGAGAGGAGCATTGCAAGATATGAGAATAATAAGGAACTGCTTGAATCTTG TTTGGATTGGTGTGAGGTGGAGATTAACATTAGGCAGTATTTTGCTGGGTCTCTCAAACGCCGTCCACAGAAAAACACTTGCCATGAGATGCTGAAACTA AAGGGGTGGCTTTCTTCCCAGCTATTCAAAGACCAGTTCCCAACTCACTTTGCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCGATGT CTGGTCTTTTAAATTTAGCTGCAAAGTTGCCACAAGGGAGTTCAAATCATGAGAATGGGCCATATGTGTATATTTCATATGGCTGTGCTGATAAAGAAGC TAGTTCTGTGACAAAACTCTGCTATGACTCATATGATGTGGTTAATATCATGGCACATACCACAGATGTCCCCCTTACTACTGAACTCCTTACAAAAGTA AGGAAGCTACTGAAAAAGCAGAAAGCCCTGTGTCAAAGGGAGTCTTCTAAAATTTCTACCGAGCAGCTACAGGAGCAGAAAGTAAATGGAATCCCATTAT TGGATGCTCAAGACATGGAGCAAAAAGAATGGCAGAGTATGACCACAGAAAGAAAGGACTTTTTCAGGAGAGTCAATAGAACATCTTGTATCTCAACTGA AACACAAAAATTAGGGAGTAGAAGTATAGACAACAATGCTGACCTGGATGGAGAATGTGATATATTTTCTGATTCTGATTCTGATTCTGAGTCCACTTTA CCTCTCCATGGGTGTGTTCAAAGCACTGAATTGTTTACAAGAAATAATTCTATAAATCCTTCCCGAAGTTCAAACAGCAAGAGAAGTAAGTTCACTGAGC TTTCTGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTGCCAAAGCTCATAGAATACCTTAAAAAACACTGTGATGAACCTTCTTATACCGGTGACTA TCATCACAAGAAAATGGTTCATCCTATTCTGGATCAGAGCCTTTTTCTTGACAGCACTCACAAAAAAAGGCTTAAGGAGGAGTTTAAGATTGAACCCTGG ACTTTTCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGCTGTGTACATGTTGTATTGGAATTTA TGTCACCGGAAAATGTTAGCGAGTGTATCAAGTTAATGGACGAGGTTCGCCTGCTGCCTGATAACCATAAAGCAAAAGTGGACAAGTTGGAGGTGAAGAA ACTGGCCCTTCATAGCATGAGTGCAGCAATTAAAGAAGTACATGAACTTACATGCAAAACATAATTGCTTGTACATGCTAAAGTATATTTACAAGTCTCA GGCTTTGAAGCTATTGTGTTCCATTTTTGTACAGAGTATTCTCAAACTAAGATCTATCAAAGTACTTATTATTGAATTGATTAATCTCAGTTACTATCAT TTTTGGTATGTTTTGACGTTTTATGCCTCACCTGAATTTGAAATAAAAGTATGGTCCATACTCCATATATTTTATGCCTCAATGAGGAAAAAGACTTCTT AGTTCACACCATTATCTATCAATTGCAATTCCTCTTTGGTAAAGCTACGGGGC
• Tissue: pods
• Gene name: LI_gene_178423;
• Additional information: details;

Expression of Ll_transcript_403858

FPKM

• PAB: 0
• PNAB: 1.4
• PS1: 2.9
• PS2: 1.7
• PS3: 1.6
• PW1: 2
• PW2: 1.2
• PW3: 1.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_403858

• Blastp: Lysine-specific demethylase JMJ25 from Arabidopsis with 36.26% of identity
• Blastx: Lysine-specific demethylase JMJ25 from Arabidopsis with 34.87% of identity
• Eggnog: lysine (K)-specific demethylase(ENOG410XTAA)
• Kegg: Link to kegg annotations (AT3G07610)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445607.1)
• Pfam: WRC (PF08879.9)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;