Id Trinity | TRINITY_DN50603_c2_g2_i6 |
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Name Transcript | Ll_transcript_451416 |
Sequence | CATCTCTTTAGATATATTTTATTCTCTTTTATTTGTATGAGAACTTGAATTAATTATACCGTGTCCAATTGTTAACGACACTGTGACCACAACCTTTCAC ATTCTCCGACCGCCATGGCTAGCCGCAGTCACCGAAAACCTCCACCGGAAAATTCAAACGCCGGTTATCATTCAAAGCGGAGAATACCTTATCAATTAAA ACCCTCAGCATTATGGTCTCACACTAAACGGCGCAGATTCAGTTCAAATCCCCAAACCGTGACTCGAGACACCAATAACCCTTCTCGGCCGAACCGGTTC GAACCATTTCGTTCTTCGTCTAAGTCTCGCAGAAGGAAAAGGGATGAAAAATCAATCAGAAGCGGTATTGTTGAAGATTGTTCTTCTAGAAGATGGGCTT TTTCTTCCGCAGATTGTTCTAACTACAAGGATAAGGTGGTAGTTGTTTCATACAATATACTTGGTGTTGACAATGCATCAAAGCATATGGATTTGTATCC CAATGTTCCACGTCGTTACTTGGACTGGGATAGGCGGAAAGGACTCATACTTGAAGAAATCGATAACTATAGTGCAGGCATACTGTGTTTCCAGGAGGTT GATCATTTTAATGATTTGGATTATCTTTTCCAGAACAATGGCTTTAAAGGTGTTTACAAGGCCCGCACAGGGGAAGCACTTGATGGGTGTGCTGTATTCT GGAAAGATAATTTATTCACTCTTTTGGATCAAGAAGATATAGAGTTCCAAAGATTTGGCCTCCGTAATAATGTTGCTCAGCTTTGTGTTTTGGAGGTGAA ACATGATGAACTAGAATCTGATACATGTGCCCTAACAGAAGTGACACCATCAATCAGAAAAAAAAGATTTGTGATCGGAAATATACATGTACTGTTCAAC CCAAATCGTGGAGACATCAAACTTGGCCAGACTTTTACTTGATAAAGCCTACAAGTTATCACAGAAATGGGGCAGCATCCCTGTTATTATTGCTGGGGAC TTAAATAGTGTTCCACAGGTAAGATCTTGCTTTGTGCTTAATAGTTGAATAATTTTAGATTAGAGATCTGATGTGTTGTTACTTCATTTCTTCTATTTGT TTTCATCTCTTGTTATCAGAGTCCAATATATGAATTCTTGGCTTCATCCAAGGTGAGTTTGTCATCTCCTGATCATGGTATATTCTCAAGTCTTGTACCT TATTTTTTGTGCAGTTTTTGAGAGATATTTGATTATACGAACAGACCTTGAATAGGTGATTTATTTGTTCCTTCCATATTTGTTCTTTCCCCCATCCTTT AGGTTTAAGAAGGGCAGGATTTTTTTGTTGGGGAAGGGGCTTTTCTGTTTAACAACTTAAGCTCTAATTATAGCCTCTCAATGAGTTGTCAGTATTTATT CATGAAGTTATTGTTCTCATTATTGCAGTTAGACATCCAATTACATAATCGCAGAAATATATCAGGACAGCTTGATATCGAGTCCAATAACAGAGTCTTC AGATC BLAST |
Tissue | pods |
Gene name | LI_gene_178490; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_451416
Blastp | Carbon catabolite repressor protein 4 homolog 5 from Arabidopsis with 58.29% of identity |
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Blastx | Carbon catabolite repressor protein 4 homolog 5 from Arabidopsis with 59.57% of identity |
Eggnog | Ccr4-NOT transcription complex, subunit(COG5239) |
Kegg | Link to kegg annotations (AT1G73875) |
CantataDB | Link to cantataDB annotations (CNT0000945) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019448405.1) |
Pfam | Endonuclease/Exonuclease/phosphatase family (PF03372.22) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |