Ll_transcript_449912

• Id Trinity: TRINITY_DN50613_c2_g1_i1
• Name Transcript: Ll_transcript_449912
• Sequence: CTTACTTGGTTGCAAATAACGTGCGTACATTTTTCAAAACACCCGCCTCAACCCGATAACGGTGGAGAAGCTCGTAACCGAAGACAGAAAAGATAAAAAA TGGCATCGGTGACGGTTGCGGCGGCGTCAATGTTGTTATCTGGTGGCTGCCGGAGCTTCCGCTTAACTGCGGCAGCGCGCGCTCTTGGAATCTCTCCCTC AGCTCTTGTCAAGCACTACAATAACCACGCGCCGAGTCAGTGTTATCGAAGTTCACATAACAGTAACACTATACTTGCCGTTGAAACTAACTCCTCAACA ATCGATACCACACCTTCTTCGGAAAGCTACCAAATCTATGATCGATTACTTCCATGTCCATCGCACAAATCTCCACCAAGAATTGAGCACTTAGTTGTAT CAGAAGAAGGATCCGTGTTAGAATTTATTTGCAAAGCACTCGATCTTCCTCCTCTGTATGTTTCAGATTTAATTCAATTTGGAGCTGTACACTACGCTCT TGTATGTCCACAACCTCCTCCTAATGCTACAGAAGAGCAAATTAGGACATTCAAAGAAGTAACTGATCCATCGGTTTTGCGAAAAAGAACTTCAATCAAG GGGAAAACTGTACGAGAGGCACAAAAGACTTTTCGTATAACCAGTGTGGATCAATTTGTTGAACCAGGAATGTACATACGAGTTCATGTACATCCTAAAC GCTTTCCTAGGTGCTATGAAATTGACTGGAGATCAAGGATAATTGCTGTGGCAGAATCGTATGTAGTTTTGGATAAACCTGCTGGTACATCAGTAGGTGG CACTACTGACAACATTGAAGAAAGTTGTGCTACCTTTGCAACTCGTGCCTTGGGACTTACAACCCCTTTGATGACTACCCATCAGATTGATAATTGCACT GAAGGCTGTGTGGTGTTAGCTAGGACCAAAGAGTATTGCTCTGTGTTTCATGGCAAAATCCGTGAGAAAAAAGTGAAGAAGCTCTATCTTGCTCTTGCTG CTTCTCCTTTGCCAACTGGAATCATTACCCATTATATGCGTCCTTATAACATGGCTCCTCGACTTATTTCTGAAGATTTTATTAAGGGATGGCCTCTTTG TCAACTTGAGGTCATGGAATGCAGAAGGGTTCCCTGGCCAAGTACTGTTATTCAGGGCAAATACTGTGTGGAAGACTGTGGATGGCCTTCCCAAGATTAT GCTTATGAGTGTACAATCAATCTTCTTACTGGTCGAACTCATCAGATCCGAGCTCAATTTGCTGCCTATAAGGCACCATTAATTGGTGATTCTATGTATA TGCCAGCTGCAATCGCAGAGATGGCTAACCCTGGACTTAATCCATTTGGAAAATACAAGAAAGAATTCAGCTGTGAGAATGAAAAAGAAACCGCTGTTAT AAATTGGACTGCACAACATGGAAAAGAACCGGGTGTTGCAATTGGTCTTCAGGCATGTCAAATTTCATGGGATGATGGTGAACACTTTTACAATGCCGGC TCGCCTTGGTGGAGGAGTGAAACTGCTTGAAATGTGTGCTTTATGGATTGATATAAATATTCAAAAGACAAGAAGATCAAGTGGTGATAGACCATTTAAT GTTGGTTTGTCGTCCAATGGAGTAAGCTTGCCAGATTTTCTTCAAGTAAGGAAAAAAGGAAGACGTGTGGTTGTGAAACACTGTCATATGCTGGAGAACC TTGTGACACCCTTTCTACCAAAGCAACTCTGAACAGGTAAGCCAGATAGGATAGGTTATTCACGAGGTAAGCCATTTCCATAAATAGAGAGAATTTAGTT TATTATTTTACTTTGAGATTGAAGAACTTAAAAAATGTCATATATTAATGGAAATACAGCTGACTGAGATACTATAATGTGGTAATATTGCCTTAACCTC ACCTCAAAATGTATGTAATTTGCTTTACTGTTCTGTCATATTTTGGCATGGGGCCTTGGGTTGCTGCATATTTGGATTCACCTTGAAATTTAAAAGGATA ATTTAAAATTATAAATACTTAGAAATGTGTACATTATGAAACTTGAGGACTCAAATGGGTTTTCTGAAAATTAAATACCAAATAGTCTAATTTTCTTTAC ACTTGAAGTCTGTTTTGTATTTTTTTTAATAAAAAAACAACTTCATAGTTCAGCATGTGTTTCTGAAATGTTGTTAGTGGA
• Tissue: pods
• Gene name: LI_gene_178553;
• Additional information: details;

Expression of Ll_transcript_449912

FPKM

• PAB: 1.3
• PNAB: 5.8
• PS1: 4.1
• PS2: 3.9
• PS3: 5.1
• PW1: 4.1
• PW2: 3.1
• PW3: 3.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_449912

• Blastp: RNA pseudouridine synthase 6, chloroplastic from Arabidopsis with 66.53% of identity
• Blastx: RNA pseudouridine synthase 6, chloroplastic from Arabidopsis with 66.53% of identity
• Eggnog: pseudouridine synthase activity(COG0564)
• Kegg: Link to kegg annotations (AT4G21770)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019418851.1)
• Pfam: RNA pseudouridylate synthase (PF00849.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;