Ll_transcript_449922

• Id Trinity: TRINITY_DN50613_c2_g1_i10
• Name Transcript: Ll_transcript_449922
• Sequence: CGCGCGCTTGGAATCTCGTACTCAGCTATTAACAAGCACTACAATAACCACGCGCCGATTCGGTGTTATCGGAGTTCACATAACACTAAGGCCATCGTCG CCGTTGAAACTAACTCCTCAACAATCGACGCCGCAAACTTAATCGCCACGTCTTCTTCGGAAAGATACCAAAACTATGATCGGTTACTTCCATGTCCATC GCACAAATCTACACCGAGAGTTGAGCACTTAGTTGTATCAGAAGGAGGAACTGTGTTAGAATTTATTTGCAAATCACTCCATCTTCCTCCTTTGTATGTC GCAGATTTGATCCAATTTGGAGCTGTGCACTACGCTCTTGTATGTCCACCGCCTCCTCCTAATGCTACTGAAGAACAAATTAGGATATTCAAAGAAGTAA CGGAACCTTCGGTTTTGCGAAAAAGAGCTTCAATCAAAGGCAAGACTGTGCAAAGGGCACAAAAAACTTTCCGTATAACTAGTGTCGATCAATTTGTTGA GCCGGGAATGTATATACGAGTTCATGTACATCCCAAACGCTTTCCCAGGTGCTATGAGATTGACTGGAGATCAAGGATAATTGCTGTGACAGAACTGTAT GTAGTTTTGGATAAACCTGCTGGTACTTCAGTAGGTGGCACTACCGACAACATTGAAGAACGTTGTGCTACCTTTGCAACTCGCGCCTTGGGCTTGACAA CCCCTTTGATGACTACCCATCAGATTGATAATTGCACCGAAGGCTGTGTGGTATTAGCCAGGACTAAAGAGTACTGCTCCGTGTTTCATGGCAAAATCAG GGACAAAATGGTGAAGAAGCTCTATCTTGCTCTTGCAGTTTCTCCTTTGCCAATTGGAATCATTACCCATTATATGCGTCCTACTAACATGGCTCCTCGA CTTGTTTCTGAAGATTTTATTAAGGGGTGGCAGATTTGTCAACTTGAGGTCATGGAATGCAATCAGGTTCCTTGGCCAACTACTGTTATTCAGGATAAAT ATTGTATTGAAGACTGTGAGTGGCCTTCTAAAGATTATGCCTATGAGTGTAAAATCAAGCTTCTTACTGGTCGAACTCATCAGTCATATGCCTTCATGAG CTGTGGAAGGCTGTTGACCAGCTGCCTTTGTTGATTAAACAATAACTCAGCTGCTACAAATCACAATAGTGCAGACACTATATTGTTCTAGGAATCATTG GATTAGGAGAATACAAGTGTGACCATGAGAGTTTCCATTTGAAAATATATCCCCTGCCCTCCAATACATATTCTGGATGTTTTCATACGCGAAAATCTGA TTCGAGCTCAATTTGCTGCCTGTAAGGCTCCATTAATTGGCGATTCTACGTATATGGCAGCGGCGATTGCAGAGATGGCTAATCCTGGACTTAATCCATT TGGAAAATACAATAAAGATTTCAGTTGTGAGAGTGAAAAAGAAACTGCTGTTATAAATTGGATTGCACAACATGGAAATGTGCCAAGTGTTGCAATTGGC CTTCAAGCGTGTCAAATTTCATGGGATGATGATGAGCACTTCTACAAAGCTGGTTTGCCTTGGTGGAGGAGTCAAATGGCTTGAAATGTGTGCTTGAGGA GAGATATCATGGTTATGATCTTGTTCTGACTCATTTTTTAGTGATGTATAATCATTTAAGGTGAAAATATTTTGATTTATTTGTATGCCTGGAACTTAAT TTATATAGGTTTTATATGCAGATATAATAATATTAAAAGGCATAAAAAGCGGACCAATTTATGTTGGTATGCTCATTAGCGAGGTTTGAGGAGGGTAAAT GTACGCAATTTTACCCCTATAAGCGGGAATATTGTTTCCAGGATTTGAACTTGTGACACCATTGTGCCAAGCTCAGCCTCTTTTGTGCACATTATTATGA TGGCTAGGCATGCTTTCTGGCGGCCCCCAATCTATCATATATGAATCGAACACAAATTAACTGTCCCAAAAATATTTGTCTCTTCCCG
• Tissue: pods
• Gene name: LI_gene_178553;
• Additional information: details;

Expression of Ll_transcript_449922

FPKM

• PAB: 0.5
• PNAB: 0.3
• PS1: 2.1
• PS2: 0.4
• PS3: 0.8
• PW1: 0.8
• PW2: 0.4
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_449922

• Blastp: RNA pseudouridine synthase 6, chloroplastic from Arabidopsis with 64.17% of identity
• Blastx: RNA pseudouridine synthase 6, chloroplastic from Arabidopsis with 64.43% of identity
• Eggnog: pseudouridine synthase activity(COG0564)
• Kegg: Link to kegg annotations (AT4G21770)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019418853.1)
• Pfam: RNA pseudouridylate synthase (PF00849.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;