Ll_transcript_449933

• Id Trinity: TRINITY_DN50613_c2_g1_i17
• Name Transcript: Ll_transcript_449933
• Sequence: CGCGCGCTTGGAATCTCGTACTCAGCTATTAACAAGCACTACAATAACCACGCGCCGATTCGGTGTTATCGGAGTTCACATAACACTAAGGCCATCGTCG CCGTTGAAACTAACTCCTCAACAATCGACGCCGCAAACTTAATCGCCACGTCTTCTTCGGAAAGATACCAAAACTATGATCGGTTACTTCCATGTCCATC GCACAAATCTACACCGAGAGTTGAGCACTTAGTTGTATCAGAAGGAGGAACTGTGTTAGAATTTATTTGCAAATCACTCCATCTTCCTCCTTTATTTGAT CCAATTTGGAGCTGTGCACTACGCTCTTGTATGTCCACCGCCTCCTCCTAATGCTACTGAAGAACAAATTAGGATATTCAAAGAAGTAACGGAACCTTCG GTTTTGCGAAAAAGAGCTTCAATCAAAGGCAAGACTGTGCAAAGGGCACAAAAAACTTTCCGTATAACTAGTGTCGATCAATTTGTTGAGCCGGGAATGT ATATACGAGTTCATGTACATCCCAAACGCTTTCCCAGGTGCTATGAGATTGACTGGAGATCAAGGATAATTGCTGTGACAGAACTGTATGTAGTTTTGGA TAAACCTGCTGGTACTTCAGTAGGTGGCACTACCGACAACATTGAAGAACGTTGTGCTACCTTTGCAACTCGCGCCTTGGGCTTGACAACCCCTTTGATG ACTACCCATCAGATTGATAATTGCACCGAAGGCTGTGTGGTATTAGCCAGGACTAAAGAGTACTGCTCCGTGTTTCATGGCAAAATCAGGGACAAAATGG TGAAGAAGCTCTATCTTGCTCTTGCAGTTTCTCCTTTGCCAATTGGAATCATTACCCATTATATGCGTCCTACTAACATGGCTCCTCGACTTGTTTCTGA AGGTAGCCATACTAATTGGAGTGATTAACAAAGATTGCTTGAGAACCCTTAGTAAATAATTGTGCTTTCATTGCCAATAAATAAGTGTGCCTTCATTGAC TGTGCTTTTTCAGCAGACTCCTGCAGAATGACATGAGACATTAGCTTTGCCTTGTACTGAAATTCTATATTCGACTCCTAAAAAGAATGACATGAACTTA CATGATTGTTATGTTCCCGATGGAGTATAATTTGAATGGTTGGATGTTTATTATCCTATCCTAATGTTCACCGACTTTTTTGTACCCGTGGCAACATGAT GTGTAAATTGACATGAGCATTTCCGTCAAAGTGTAAAATTGTGAAACAATTGTTTGCCCTTTGGCATCGGTTTAGTATCCAAATAAGGGTCTTGTTTTGT GGATTCAACCCAGTTGTTTAATTGATTACAGATTTTATTAAGGGGTGGCAGATTTGTCAACTTGAGGTCATGGAATGCAATCAGGTTCCTTGGCCAACTA CTGTTATTCAGGATAAATATTGTATTGAAGACTGTGAGTGGCCTTCTAAAGATTATGCCTATGAGTGTAAAATCAAGCTTCTTACTGGTCGAACTCATCA GGTCTACTAGCTCTCTTTTATGTGTTGTATGCATTTTTATGGAAGGGCCTTTTTAATTATCAAGTTTTAACACATGAAGATATAGTTGATTGACAATTCT CCTCATGTGAACATTTGAGTGGTTCATTGCTCACTTTATTTTTATATGTTTCAGTCATATGCCTTCATGAGCTGTGGAAGGCTGTTGACCAGCTGCCTTT GTTGATTAAACAATAACTCAGCTGCTACAAATCACAATAGTGCAGACACTATATTGTTCTAGGAATCATTGGATTAGGAGAATACAAGTGTGACCATGAG AGTTTCCATTTGAAAATATATCCCCTGCCCTCCAATACATATTCTGGATGTTTTCATACGCGAAAATCTGGTATCAACTTGAATGTTTGATTCTTTTGTA TGAATGGTGAATCACTTAGTAACAGTTAGTAGTGTTTCGAATTTATTATAATGAATGAATAAAGAATGTCTTCTTATTTCTATTCTTTGACTATCTTTTA GGAAGAGGAAACTATGTTTTGACTAGTACCTTCCTTTTTAATGCAGATTCGAGCTCAATTTGCTGCCTGTAAGGCTCCATTAATTGGCGATTCTACGTAT ATGGCAGCGGCGATTGCAGAGATGGCTAATCCTGGACTTAATCCATTTGGAAAATACAATAAAGATTTCAGTTGTGAGAGTGAAAAAGAAACTGCTGTTA TAAATTGGATTGCACAACATGGAAATGTGCCAAGTGTTGCAATTGGCCTTCAAGCGTGTCAAATTTCATGGGATGATGATGAGCACTTCTACAAAGCTGG TTTGCCTTGGTGGAGGAGTCAAATGGCTTGAAATGTGTGCTTGAGGAGAGATATCATGGTTATGATCTTGTTCTGACTCATTTTTTAGTGATGTATAATC ATTTAAGGTGAAAATATTTTGATTTATTTGTATGCCTGGAACTTAATTTATATAGGTTTTATATGCAGATATAATAATATTAAAAGGCATAAAAAGCGGA CCAATTTATGTTGGTATGCTCATTAGCGAGGTTTGAGGAGGGTAAATGTACGCAATTTTACCCCTATAAGCGGGAATATTGTTTCCAGGATTTGAACTTG TGACACCATTGTGCCAAGCTCAGCCTCTTTTGTGCACATTATTATGATGGCTAGGCATGCTTTCTGGCGGCCCCCAATCTATCATATATGAATCGAACAC AAATTAACTGTCCCAAAAATATTTGTCTCTTCCCG
• Tissue: pods
• Gene name: LI_gene_178553;
• Additional information: details;

Expression of Ll_transcript_449933

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.6
• PS2: 0.2
• PS3: 0.6
• PW1: 0
• PW2: 0
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_449933

• Blastp: RNA pseudouridine synthase 6, chloroplastic from Arabidopsis with 80% of identity
• Blastx: RNA pseudouridine synthase 6, chloroplastic from Arabidopsis with 74.65% of identity
• Eggnog: pseudouridine synthase activity(COG0564)
• Kegg: Link to kegg annotations (AT4G21770)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019418853.1)
• Pfam: RNA pseudouridylate synthase (PF00849.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;