| Id Trinity | TRINITY_DN50614_c1_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_451507 |
| Sequence | GGGAAGAAGGATCTGAGGCAGTGGCCATTAAAGCAAATGATACCATGTAAAAGTAAGAAAAGGAAATAGACTAGAGAAGAAAAGAAATGGAATCAGAAAA ATGATTCTTGTATATTGAATTAGTTGAATCTGAATACAATGAGTTTTCCTATTTATAGAATAGGAAAACAACTAAACAAACTTAATCAGAACCAATAATA ACAAAATTCTACTAACAAAATTCTAACAAATCTGTTTGCACAAAACATCAAACAGAAAGAGAAACAAAACTGATCAGTAAATTAAATTGAAACAGAGTTT CAAATTAATACTTGATCTCTAATATTCTTGCCTGTATTGTGCCTCATCTTCTCGGACAGCTCCAACGTGTCGGAAATATGCCTCTTCACCACGAAAATCC CCCCCCCACAAACAAAACCTCCTCAATGAAAGGGAACACCTTCGTCGCGAAACTCTTCTCCTCCGCGAGCCACACCTCCTCCTTGCGTCGCGCTTCCAGC ATCATATTCTGGAATTGGTTCGTCGACGAAGCGGCAATGTGCCAGCTTCGCTGCTATCTCTACCATTTGTTCTTCGTGCTTCTTGGCTAGGGCTTCCGCA ACTTCCAATCTCAATTCGCATTTCCTCACGTTCTTGTTTTCACTCTTCTCCGGACTGTGACATACTTCGCGTCTTCATTAATCAACAGCGAAATCACAGC GGTTTTCAGGGCACCAGAATCGGTGCTCTGATGCCAGTGATAACACCGGTACCAAATTCACAAAGAAAGAAGAAGAAATTCGTAAACAATTCGATCCGGA ATCAATTCGATTCCGAATGCTAATACCTCTTTATTGAATCTTTATAGAAATGCAAGAATAAGGGAAGAAGATTACAAGGTTGAAGAACCCTAATTGATTC CCTGAATCAATTATCCTCTCTACTCAATATCTCCAAAAACTATTTACAAAGGCACTCCCACTCCTATTTATACTTTTCTGATTCCCTGCCTAACTCTGTT CCAGAATTCCCTGCACTAACCGAATCTGCCGCTGCTGCCACAATGTTGCTGCCACGTGGATTAAGAGTTCCACGTGGCCTCCTATGATACACCCTAGTGA TGGGTGGTCTTGCCTGCACCCTATCACCCTCCCGGAAGAACCAACTTGTCCTCAAGGGCAAATTGAGGAAAAACTTCTTTAATTTGTGTAGCCGACTCCC ACGAATTTTCACACTGGCAATTCCTCTCACTGAACGAAAACTTCCACATTTCCACCACTATCAACACGGTGTTGCAAGATTTCAGCCGGTTGTACCTTCA ACTCCAACTCCTCAGATAACATCTTCGGAAGAGGTTGAGAATGGATTTATTAATGCCACCTTTGGACCTGGTTGTCATAGGATGAGTGGAGTGAGGTATG GGTGTAGGAGATGGTTGAGATGAAATAATTGAGGTATCAGTAGGAATATTAGAAGGAGCAGAGATGGTAGGAAAAGTGGTATTAGTACTGGAGGTATCAG TAGGGATATTAGAAGGAGCAGAGGTGTTGGTACTTGAGGTAAGTGATGAGGTAATGGAGTTTGTGGGGCTAGTGGTAGCTATAGGATTGGATTCTGTAGT AGAAGGAAAGTCAGGTGGTATGTATTGGTTAGTATGTTGAGAGGATATGATGTTGTGAGTGGTAGGGTTAAGGGATGGATGAGGGGAAAGTGTGCTAAAA GGGAAGTGGGTTTCATTAAAGGTCACATCTTTAGAAATGTAAAACCTGCCATCAGTAGATAGACATTTGTACCCCTTGTGCATTGAAGAATAACCCAAGA AGGTACACTCAGTAGATCTGTAATCAAGTTTATGAGTGTTATATGGTCTTAGTAAAGGATAACAAGCACACCCAAATACTCTTAAGGTGCTGTAATCAGG TTGAACACCAAAGAGGAGTAAATGAGGTGATTTATGGTTGAGGGTTGGGGATGGCAGTCTGTTGATGAGGTAAACAACAGTAGTGAAGGCATATTCCCAA TAGGTTAGGGGTAGATTAGCATGAGCTAGTAAGGTTAGACCAGTTTCTACAATATGTCTATGTTTCCTCTCTACTGTACCTTGTTGGTGATGGGTATGTG GGCAAGACAATCTGTGGGTAATACCAAGACTAGAAAGATAGGTTGTGAAGGGTCTGAACTCACCACCCCAATCAGTTTGAACAACCTTTACAATTGTGTT AAATTGAGTTTGCACAATTTTGAGAAATTGTTTAAAGATGGTGAGTGTGTCAGATTTTTGTTTCAAGAGATAAATCCATGTATGCCTGGTTTTGGCATCA ACAATGGATAGATAGTAGTTGAACCCAGACTCAGATAAAATAGGTGAAGGACCCCACAAATCTAGATATAATAAGTCAAAGGAATTAGAATAAGAAGAAA GATGGAGGTGAATGAATTCTATGAGACTTTCCATAGCAACAAGCCTTACAAACAGTAGTATCTATTTTATTAGAATGAGAAATATTACGTTGGGATAGAA CTTTGTTTACAACATTAGCATCGGCATGACCTAACCTACTATGCCATAGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_178562; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_451507
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.1% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.71% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420682.1) |
| Pfam | Integrase core domain (PF00665.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |