| Id Trinity | TRINITY_DN50634_c1_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_451517 |
| Sequence | AAAGCCATAACATTCCATTCTCACACAAGTGCTAGAGCCTTATCCCCTAGCCGCTTCTTTCTCTCTGAGGTTTTTGCTCTTTAAACCTCTTCTTCACCAA AATGGCTTCTTCAATCATAGGCGTTTCTTCCATTTACCAAACCCCTTCTCTTCAACGACAACAACAAAGAAACCCTTCCGTTTCATTGAAACCATTGTCG TTTCACAACAACATCAACAACGATAACTCCCACTTCAACACTCTTCTCAGAGCTCACCTTTATAATCGCAGAATTTCTGCCATTGCTACCAACAATTCTT CCTTACTCGCTGAAGAAGCGCTTCATGGATTAGGCTTTGATGATGTCACTGATGATAACGATGATTTTGATAGTTTTGATTTTGAGAATGAAAATGAAAA CCCTCCTGCGACTATTAGCACCGATGAGCTTGATGTTTCTAAGCTGGATTTGCCTTCGCGACTCGTGGAATCGCTTAAGAAACGTGGAATCACTCACCTT TTCCCTATTCAGAGAGCTGTGCTAGTCCCTGCACTAGAAGGTAGAGATATCATTGCTCGGGCAAAGACAGGGACTGGCAAGACATTAGCATTTGGAATTC CAATTCTTAAAGGCCTCACTGATGATGACCAGAATCCTATAAGGCGTGGTCGTCTTCCTAAAGCATTGGTCCTTGCGCCTACTAGGGAGTTAGCAAAACA AGTAGAGAAAGAGATCAATGAATCTGCACCTTATCTGCACACAGTTTGTGTTTATGGTGGTGTTTCCTATGTAACTCAGCAAAGTGCACTTTCGCGTGGT GTTGATGTAGTAGTTGGAACACCTGGTAGAATAATTGACCTGATAAATGGTAACACCCTTAAACTGAGTGAAGTTCAGTATTTGGTCCTCGACGAAGCTG ATCAAATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAAAAGCTACCATCGAAGAGGCAGAGCATGCTTTTTTCCGCAACAATGCCAGC GTGGGTGAAGAAATTGGCTAGAAAATATTTGGATAAACCATTGACAATTGATTTGGTTGGTGATGAAGACGAAAAGCTCGCTGAAGGGATAAAACTTTAT GCTATATTAGCCACCGGCTCGTCAAAACGGACAATTCTTTCTGATCTTATAACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACGCGTACAAAAA AAGATGCTGATGAAGTATCATTGTCATTAACAAATAGTGTAACTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAAAGAGAGAGAACATTAAATGG TTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTAAGATCATAGGGTGCACTT CACTGTTTCATCTGACTCCAGATTTAGAATTTTATGTTTGACAAAATGTGTGAACACTAAACAGTGAGTGGTGTACATGAATATATGTTCACTTTGATTT CATTGTTTAATTATTTCTCTTGTTTTGCACTGACCATATAGAAGTTTAAGATCAATATTTGTATTAGAAGGTTCTTATGTATGCCTTGGTTTAGTACTAA AATGCACTCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_178724; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_451517
| Blastp | DEAD-box ATP-dependent RNA helicase 3, chloroplastic from Arabidopsis with 69.75% of identity |
|---|---|
| Blastx | DEAD-box ATP-dependent RNA helicase 3, chloroplastic from Arabidopsis with 69.07% of identity |
| Eggnog | purine NTP-dependent helicase activity(COG0513) |
| Kegg | Link to kegg annotations (AT5G26742) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452324.1) |
| Pfam | DEAD/DEAH box helicase (PF00270.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |