Ll_transcript_450688

• Id Trinity: TRINITY_DN50644_c0_g1_i2
• Name Transcript: Ll_transcript_450688
• Sequence: GGGTAATGCAAAACCCTGTTCCGCATTTGCGAATTGCTATCAGCTCGTTTCCTCTGTATGTGGTTTTGCCAACTCCGTTCTCGCCTCCCATTTCAAACTT CACTGTCACACAGATTCCATCGTTACTTCACCGATATGGCGAGTGAAGGAGGAAATAGTTTTGCGAGAAGAGATCGTCTAAGAGAAATTGAGGCTAAGGT TCAAATATGGTGGGAAGAAAGTGATATTTTCCGGTCTGAACCGGGTGATAAACCACCTGAACCGGGTGAGAAGTTTTTTGGGAACTTCCCTTTTCCTTAC ATGAACGGTTACCTGCATCTTGGACATGCTTTTTCGCTCTCGAAACTTGAATTTGCCGCGGCTTTTCATAGACTCAGAGGCGCCAATGTGCTCCTTCCTT TCGCTTTTCATTGCACTGGCATGCCGATTAAAGCGTCGGCTGATAAACTTGCAAGAGAGATTCAACTATTCGGTAACCCACCGGTTTTCCCAGGCCAATC GGAAGTAGTAGTAGAAGAAAAGAATGACGATAATTCGCAGAATGAGACTGCTCCTGATAAATTCAAGGGGAAGAAATCTAAGGCTGCTGCTAAATCAGGT GGTCAAGTTTACCAATGGGAAATTATGCGTAGTGTTGGTATATCCGATAGTGATATAGCGAAATTTCAGGATCCTTATGAGTGGCTTAAGTTTTTTCCTC CATTGGCCGCGGAGGACCTTAAGGCTTTTGGGTTAGGTTGTGATTGGAGAAGGTCATTCATTACAACTGATTTGAACCCATATTATGACTCTTTTGTTAG GTGGCAAGTGAGGAAATTGAAGTCTTTGGGGAAGGTTGTTAAAGATGTTAGGTATACGATTTTTTCACCATTAGATGGTCAGCCATGTGCCGATCACGAT AGAGCCAGCGGTGAAGGGGTTTTGCCACAAGAGTACACTATTATCAAGATGGAATTGTTAAAGCCTTTCCCTGAGAAATTTAAGGTTTTGGAGGGAAAGA AGGTTTTTTTGGCCGCTGCAACTTTGAGACCTGAGACTATGTATGGCCAAACCAATGCATGGGTGCTGCCTGATGGCAAGTATGGAGCCTTTGAAATAAA TGAAAATGAGGTGTTCTTTATGGCGCATAGAGCAGCTCTTAACCTTGCTTACCAGAACCATTCACGAGTCCCTGAGAAACCATCATGTTTGCTTGAAGTC ACTGGTCATGACTTGATTGGGCTTCCGTTGAAATCACCTCTTGCATTTTACGAGGTTATTTATGCACTTCCTATGTTGTCCATCTTAATGGACAAAGGTA CTGGGGTGGTTACCAGTGTACCTAGTGATGCCCCTGATGATTACATGGCCTTGCACGATTTGAAGTCAAAACCAGCATTTAGAGAGAAGTTTGGTGTTAA GGATGAATGGATTTTACCGTTTGAGATTGTGCCTATTATTGATGTTCCACCCTTTGGAAATAAGTGTGCTGAACGGGTTTGCTTGGATATGAAAATCAAA AGTCAGAATGAGAAAGAAAAGCTTGCAGAGGCCAAGAAGCAAACATATTTAAAGGGATTCAATGAAGGAACAATGATAGTTGGGGAATATGCCGGAAAGA AAGTTCAGGAAGTTAAACCCGTCATTAGGAGCCAGCTTTTGGAAACAGGTCAGGCTATTGTTTATAGTGAGCCAGAAAAGCGAGTAATGTCAAGATCTGG TGATGAATGTGTTGTAGCTCTAACTGATCAGTGGTACATTACATATGGGGAACCAGAATGGAGGAAGTTAGCTGAGGAGTGCCTGTCTAACATGAGCCTG TATTCTGATGAGACACGACATGGATTTGAGCATACTTTGAGCTGGTTGAACCAGTGGGCCTGCTCACGGTCTTTTGGTCTTGGGACTCGCATCCCATGGG ATGATCAGTTCCTTGTTGAGTCTTTATCAGATTCCACTATTTACATGGCTTATTACACCATTGCACATCATTTACAGAACGGAGACATGTATGGACAGCA TGAGTCTGCCATTAAACCTCAACAATTGACTGATGAGGTCTGGGACTATATTTTCTGTGGTGGACAATACCCTGAGTCAACTGATATCTCGTCATCTATT TTAGACAGAATGAAGCGGGAGTTTGAGTACTGGTATCCATTCGACCTTCGAGTTTCTGGTAAGGATCTGATCCAAAACCATCTTACCTTCTCCATTTACA ACCATACTGCTATTTGGTCGAAGCAATACTGGCCTCGTGGGTTTAGATGCAATGGCCACATAATGCTCAATTCTGAGAAGATGTCCAAGTCAACTGGAAA TTTCAGGACATTGCGTCAGGCAATTGAGGAGTTTTCTGCTGATGCTACGCGGTTTTCTTTGGCTGATGCTGGTGATGGTGTTGATGATGCAAATTTTGTC TTTGAGACGGCAAATGCCGCAATTCTTCGGCTCACCAAAGAGATCGCATGGTATGAAGAGATTCTGGCTGCAGAAACTTCTATGAGAACTGGTCCCCCAT CTACATATGCTGATCGTGTGTTTGCCAATGAGATTAACATTGCTGTCAAAACAACTGAGCAAAATTACTCCAACTACATGTTTCGTGAAGCTCTTAAAAC TGGCTTTTATGATCTTCAGACAGCTAGGGATGAGTATAGATTCTCGTGTGGAGTTGGAGGTTACAATCGTGACTTAGTATGGCGTTTTATGGATGTGCAG ACACGTCTTCTAGCACCTATCTGTCCGCACTATGCAGAATTTATCTGGAGAGAGCTTTTAGTGAAGGAAGGTTTTGTGGTGAATGCAGGCTGGCCCACAG CTGATTCTCCTGATCTTACATTGAAGAGTGCTAATAAATATCTGCAGGAGTCTATTGTTTTGATGAGGAAGTTGCTACAGAAGCAACTTTCTGGCTCAAA GAAAGGTAATAAGAAAGGTGCTCCAGTTCCATCAGTGAAGGTAACAACAGGCTTGATATATGTAAATGAACAGTTTGATGGTTGGAAAGCCGAATGCCTC AATATTCTCCGTAGCAAATTTGACGAAGAAACCCGAACTTTTGCTCCAGACAAAGAGATCGTGGAGGCTGTCGAGAAAAGTTCTATAGGCAAAAATCCCT ACAGGCCTTTCCTGAGGTATAGGAAGGATGAAGCAATTAAACTTGGGGCTCAAGCCCTGGATTTGAAATTGCCATTTGGTGAAATTGATGTCCTTCAAGA AAACTTGGACCTGATCAAGAGACAACTAGGTCTAGAAGATGTGGAAATCTTGTCTGCAGCAAATGCTGATTCTTTGGCTAGAGCTGGACCTTTAGCTTCT CTTTTAAATCAAAATCCTCCTTCCCCTGGACATCCAACTGCCATATTTTTAACTCAGTAGCTGCTTGGTGAGTTTTTCGAAGTCCCCCTTTCTTGAAGTA TGCCATAGCTCTTCTTCTTACATGATAATTTCTTTCTATATGCAGACACAGGATGAGTTACTGAATCTGTGTTGTAAAATTTGTCCTCGATCTGATTCGA GGGTTAACTTCTCCATTTTTTATCCTTTGTTGTTCCGTTGGTGCATTCTCTCTTGTATCCTGTATAATTTTAAGATGTGCATTCATTCAGATTTCAGCCC TTTTCCCTGTATAATTTTATGAGATACATGTTATGACTTTAAGGACCGGCTTAAGTAAACTAACCTGCAAACTATGTGTTCATGTTTATAACTTTGCCTG GTAGTCACATCCTTTAGTTTAAGGCAAACTAACCTGCTTTCTGTTTGAATATAACATACATGTGTAACATTGTTTAGGTTCATTGTTTCGATTTATTTTG CATCATTTGGTTAACCAGAACTTACATTTTATGAAATCTGACTCATTATGTGATTATCATTTCTAGGTTGCAAGTGTGCTCTATCCGGAATATGTAGCGT GATTATCTTGATATGGCAATCCTGCTTTGCTGGTGATTGGGTGAGGTTGAATTTTTCAGGTTGGTGTAGTTTGTTGGAAACTGCTGATGTAAAATTAAGA TTTGTTAACATCTTACTTCATGATAGAATTCTCGGTTTTTTATTTATTTGCCACTAGTTTCCTTTATTATTGGCTCTAGAACTTCATGGCCTAGCTTTTC TGTTTGCTGAATATCGAGACATTTTTATTTTTGTTGTCAAGTGTTCTTATAGTGGCATGTTATGTTGAGAAAACTGTCGTTGAATCATAATTAAATTTTG ATTAAATTATAATTGTTTT
• Tissue: pods
• Gene name: LI_gene_178817;
• Additional information: details;

Expression of Ll_transcript_450688

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0
• PS2: 0.2
• PS3: 0.1
• PW1: 0.1
• PW2: 0.2
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_450688

• Blastp: Leucine--tRNA ligase, cytoplasmic from Arabidopsis with 71.52% of identity
• Blastx: Leucine--tRNA ligase, cytoplasmic from Arabidopsis with 71.52% of identity
• Eggnog: Leucyl-trna synthetase(COG0495)
• Kegg: Link to kegg annotations (AT1G09620)
• CantataDB: Link to cantataDB annotations (CNT0002196)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423387.1)
• Pfam: tRNA synthetases class I (I, L, M and V) (PF00133.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;