| Id Trinity | TRINITY_DN50685_c0_g5_i5 |
|---|---|
| Name Transcript | Ll_transcript_449579 |
| Sequence | TAAAACCTCAACATTGCAGGGTTTTTGAGCTGTAAAATAAAATGATAGCTGCTTCCACCCTACACATACAATTGCATCATCAAACCCACGACATGGTTTA AGCCTTCACACAATTCCCCTATACCTATATTATTTATTCCCTTCTCTATGAATTTTGAAGCATATTTTTCTCTATATTTTCATTTGTTGCCGCTGCTATT GGTTACAATTTGATGTGCAACACCAGCTCCCTCAACAAGGGGTTTTATTCTTTCTTCCCTTTCCACAATAAACCCTTTATTTCTCAACATACTCACTTAA ACATTTCCACAAACATGTGGTGCACCATTGCTAAACAAGCTGTTTCCACCACGTTTCGTGGCTTCTACCTTCGCCTGCGTCCGAGCAGGCCTCCCAATCT TTCTGGAGTTTATTGTTTCCAACAAAAAAGTGAAACTTTATACCAAGGTGATGGTGGGTACTTCAAATTTAGTGTTAAAGGTTTTGCTAGTGTTGCGGAG GTGGTTTCTTCTTCTACTGAGGCTGAGGAAGACGTTGCTCCGGATGATGAGATTCAAGAATTGCTGGATGACATGAGGAAAGAGGAGAGGAAGAAGAAGA AGGGGGAGGTTGGGTTGAGCTGGAGGAGTCAGTTGAATTCCATGAGGGGAATGAGTCAGTCGAGGTACCACGAACTTAGGAGAAGGCAGGTGAAGATTGA GACCGAGGCGTGGGAAGAGGCGGCGAAAGAGTATAGGGAGCTCTTGATGGACATGTGTGAGCAGAAGCTGGCACCGAATCTGCCATACATGAAGTCACTG TTTCTTGGTTGGTTCGAGCCTTTATGTGATGCTATTGAAAAGGAGCAAGAGTTGTTCCGGACTGGGAAGCTTAGGACGGTGTATGGGCCTTACTTTGGCC AGTTGCCGGCCGATAAGATGGCTGTTATCACAATGCATAAGTTGATGGGGTTGTTAATGACTGGAAACGACCACGGCACTACTAGGGTTGTGCAGGCTGT CCTCAGCATTGGTGATGCTGTTGAACAGGAGGTTAAGATACACAAGTTCCTGGAGAAAACTAAGAAGAAAAAGGATGGTAAAGACAAGAAAAAGGATGTG GCTGAGTCTGTCACTGCCGTCAAGGAAGAGGAAAAACTGCGGAAAAAAGTAATGGATTTGATGAAGAAGCAAAAGCTTGTCGCAGTGAGGGGGATAGTGA AGGGCCAGGATGATTCAAAACCATGGGGACCAGTCATTAAGACAAAGGTAGGAAGCCATTTAATTGAGCTTTTGATGCAGACAGCATATATACAACCGCC ATCAGATCAAATAGTTGATTGTGCACCTGATATTCGACCTGCATTTATGCATTCATTTGTAACAGTGACAAGAGAGGCACAGAAAACAAGCAAACGATAC GGTGTTATTCAATGTGATCCTCTAGTTCTTAAAGGCCTTGACAAAACTGCAAAGAATATGGTCATTCCTTATATGCCTATGTTGGTTCCACCCGTCAACT GGACAGGTTATGACAAAGGTGGGCACTTGTTCTTACCCTCCTATGTCATGCGTACTCATGGAGTCAGGCAACAACGTGAGGCTGTGAAGAAGAGCCCTAG GAAGCAACTAGAGCCTGTATTTGAGGCTCTGGATACTCTTGGGAATACAAAATGGAGGGTAAATAAGAAGGTGCTGAGTGTTATAGACAGGATATGGGCT AGTGGAGGTCGTCTTGCTGATCTGGTGGATCGTGATGACGTTCCTTGTCCCGAGGAGCCAGATACTGATGATGAAACACAAATAAAGAAATGGAAATGGA AAGTCAAATCTGTGAGGAAAGAAAACAGAGAGAGATATGCACAACGTTGTGACATAGAACTTAAACTTGCTGTAGCACGAAAAATGAAGGATGAAGATGG TTTCTACTACCCACACAACCTTGATTTCCGAGGACGTGCTTATCCCATGCATCCACATTTGAACCACCTAGGTTCAGATGTATGCCGGGGTATATTGGAA TTTTCAGAGGGACGCCCTCTTGGGAAGTCTGGTCTACAATGGCTAAAGATACATTTGGCAAATCTCTATGCTAACGGTGTTGATAAACTATCTCATGAGG GTCGTACAGCATTCACTGAAAACCATTTGGATGACATATTTGATTCTGCTGACAAACCTCTTGAAGGGAGCCGGTGGTGGTTGAGCGCTGAAGATCCATT CCAGTGCTTAGCTGTGTGCATAACTCTCACTGAAGCTCTAAAAAGCTCTTCACCAGAAACATTCATTTCACGTATTCCTATACATCAGGATGGCTCTTGT AATGGCTTACAGCATTATGCTGCCCTGGGAAGAGACAAGTTGGGAGCGGCTGCTGTCAATCTAGTTGCAGGAGAGAAGCCGGCAGATGTGTACTCAGGAA TAGCAGCTAGAGTATTAGACATCATGCAAAGTGATGCTCAGAAAGATCCTGCAATATTTCCTGATGCTCTGCATGCAAGGACATTAGTTAATCAGGTGGA TAGGAAATTGGTTAAACAAACTGTGATGACATCAGTGTATGGGGTCACTTACATTGGCGCACGTGAACAAATAAAGAGGAGATTGAAAGAAAGGGATGCC ATTTCAGACGATTCAGAGCTTTTTGGTGCTTCTTGTTATGCTGCAAAGGTAACCTTAACTGCCTTAGAAGAGATGTTTCAAGGTGCACGAGGTATCATGA GCTGGCTTGGTGACTGTGCAAAAATAATTGCATCTGAAAACCAACCAGTGCGCTGGACCACTCCTCTTGGACTTCCTGTAGTGCAACCTTACCGTAAATT AGGAAGGCATATTATCAAAACTTCACTTCAAATATTGACGTTGCAGCAAGAAACAGATAAGGTCATGGTCAAGAGGCAGAAGACAGCATTTCCCCCAAAT TTTGTTCACTCACTCGACGGTTCTCATATGATGATGACTGCAGTTGCCTGCAAAAAGGAAGGTTTAAATTTTGCAGGAGTTCATGATTCATATTGGACGC ATGCAGGTGATGTGGATCAAATGAACAGAATACTGAGAGAGAAGTTTGTGGAACTCTATGAGACACCAGTACTGGAAAATTTAGTGGAGGGCTTTCAGAG ATCTTTCCCAAAGTTATCATTCCCACCCTTGCCTGAACGGGGAGACTTTGATTTAAGGGAAGTCTTAGAGTCACCATATTTCTTCAACTGATCCTGATTT GCAGCCTTCGGCTTGGATTCTGTCTTTTAAGGCTTACTGACAACAACTCAAGTTAATTCTGTGTGAGCATTTCGCAACGACAACGGATCTTGTGGAAGTA CTCATTATAGAGGCTGTTTCAGTGGCTGTATATATCATCAATGGCATCCATCCAGGGTCTTAAAGAGGACCCTGTGGTATGATAATAATATTCATTTCCT AACTCCCTGGATGTTGATTTTTACTTGGACAGTTTTCTAAAGGGTTATACAAATGTTATGAGATAGAAGCTTTTGAAGCTAGCTAGTGTTTCAACTAGAG GGCTTACAAGGAAAAGCCAATGAATTAAAATTTGCAATGCTATTTACTTGAAGATTCCAGAGCTTCATTAACAATTTGAGTATAGCAAATTTGTGATCTG GTTCTGCACCCAAGTCACCCTGCAAATTATGCCATGGCTAGCTGCAAACTTCTTCATATCAACAGAGTATGGTACTCTTGGTGTACCTTATTTTGGTACC CTTTTATTTTGGTTTTACATGTATGTGTATTTGTACAAGTTTTTTTCTCTTGTAAATGGAAAAAGAAAAAAACACAACAAGCATTTGTTTAAATTGGTGT ACCACAAAATGATTTATAGTGATGTATACTAGCTTATTCCCTAACCTTTGAACTTATGAAACTTTTGTGACTGAAGGGAATGGGCAAAAGTAAATTCATA TTTCTACTTCCCAAAGTCTATGCATAAGAGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_179103; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_449579
| Blastp | DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial from Nicotiana with 77.79% of identity |
|---|---|
| Blastx | DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial from Nicotiana with 78.21% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (107765810) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420030.1) |
| Pfam | DNA-directed RNA polymerase N-terminal (PF14700.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |