Ll_transcript_449217

• Id Trinity: TRINITY_DN50688_c0_g1_i8
• Name Transcript: Ll_transcript_449217
• Sequence: AACCAAAGAACAAAGCACATTTTCGTGTTTCAATTGTGAAAAGTGCAAAAGCAGGGAAAGGAGAATGTTGATTGTGACTTCGTGAGAACTAAGAAAGAAG CATAAACGGTAGTGCTTTGATTCTATTGGATTGTTGGGTAGTGATTCAGATTTTGAACGTGCGCAACACTATTGCATTACGTCTCAACAAGATCCATTTG AATCATAATCATTCTTCATCACAAACCCTTGAATCTAAAGAAAAAAGCAATTTTGAAAAATTGGTTTTGTAATTCAAGCCATTTAAGACGTGGGTTTCGA AATTCAAGCCAGTTCGTTGATGGGTTTTTAAATTGAAGCCATTCCATTGATGGGTTTTTGAAGGAATCTGAAGAATTTTTTTTTCAATGTTGGAAAGCGA TCAGAATCGTCTTCTGGGTTCGTCGGAAGATGCGGAGCACGACGTGGAAGCTCAAACATCCGAAATCAATGGCGGAAGAGGGTTGAGGGATTTGCTTAGA TTGAAAAGGTTAGAGAAAGAAGGAGAAATAAGAGATCGAAATAGTTATAATCATAATCATAATTCACATTCGCATATGGATCTTCATGATGATGATGATT CTTCGCTTGGAGATAGTGCACCTCCTGAATGGGTATTGCTCCTTCTTGGTTGCCTCCTTGGTCTTGCGACTGGACTCTTTGTTGCTGCTTTCAATAAAGG GGTACATCTAATACATGAATGGGCCTGGGCTGGTACTCCAAATGAGGGTGCTGCTTGGCTTCGTTTGCAAAGATTGGCTGATACATGGCATCGAATCCTT TTGATACCTGTCTTTGGAGGAGTCATTGTTGGCATGATGCATGGCTTACTAGAAATACTTGACCAAATAAAGCAGTCTAGTTCCTCTCAAAGGCAAGGTT TTGATTTGCTTTCGGGAGTCTATCCGACAATAAAGGCTATCCAGGCTGCAGTTACTTTAGGTACCGGCTGTTCTTTGGGTCCTGAAGGTCCTAGTGTTGA TATTGGAAAGTCATGTGCCGCTGGATTCTCATTAATGATGGAAAACAACAGAGAAAGAAAAATAGCACTTGTTGCGGCTGGTGCAGCAGCTGGAATTTCT TCAGGCTTCAATGCAGCAGTTGCGGGTTGTTTCTTTGCTATTGAAACCGTGCTGAGGCCACTTCGTGCAGAGAATTCTCCCCCATTTACAACCGCAATGA TTATATTGGCTTCTGTTATCTCATCGACTGTATCAAATGTTTTACTGGGAACCGAATCAGCTTTTACAGTGCCTGCATATGATCTTAAATCTGCTGCTGA GCTACCTTTATATCTGATATTGGGAATGCTATGTGGTGTTGTAAGCGTGGCCATGAGTCGTTTGGTTGCTTGGTTCACCAAATTGTTTGAGGTTATCCAG GAGAGATTCGACCTTCCTGCTGTGGTATGCCCTGCTTTAGGTGGTTTAGGAGCTGGGATCATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCA CAAATGTGGAAGAAATTCTACATACCGGAAAGAGTGCTTCAGCTCCTGGAATATGGTTGTTGACACAATTAGCAGCTGCAAAGGTTATCGCGACAGCTCT TTGCAAGGGATCTGGACTTGTAGGTGGTCTTTATGCACCGAGTTTAATGATTGGTGCTGCAGTTGGTGCTGTATTTGGAGGGTTTGCAGCTGAAGTTATC AATTCGGCAATTCCTGGAAATGCTGCTGTTGCCCAACCCCAGGCATATGCTCTGGTTGGAATGGCTGCTACATTAGCATCTGTTTGTTCAGTTCCCTTGA CGTCAGTTCTACTTCTGTTTGAGCTGACAAAAGATTACAGGATATTGCTTCCTCTCATGGTAATCCTTCAACCAAATTCTGTTGCAAAAAAATGCTCACC TTGACGAGTGTGTAGTTTTACACTTTTCTGCTAGTTCTTATGACGTACAAAAACGAGTCAATTTTAAAGCTCGTTGTTTTCCGTCAGTTGAATTATATAA GATAATTAGTATTTTCTGACATGTTTTCTTTTTCTCGATGATTGTTGCCATATACTGTATACCATGCCATGGCTGGAGAATATTGTTTCTCTATGACACC GTGGCTTCATTATGTTTTGATCTGAAGTTGAAAGAGAATGTACAATATTTTCACTTACTTAATCTTCAACTGCTTTGGCATTGAAATGCATGTAGCATTT TGTAATATCCAGAACTTGTGAGCAGTGGTGTTTTAAGAACCCGAGAACAGGAGGTGCAAATTGCATTGAATTGTCCAAAATGTATCAGAATAGGACAAAT GGAGTGACATGGGTGCAATTATATATATCCGGGGGTGCAAACAATATTAACTATAAGGGCAATGTATAATTTTTTCCAGGTACAGGTGGCTCTGCCACAG CTTGTGGACTTGAACCTTAACCTTCTTTTGTTCTGCAGTTTTCTATCACCCTTGAATTTTACTTCACACAACTTTTTACCTTTATTCTAGTGAAAACTGC TAAGGTTCAATATTTTCATTTCGTGTAATTGTGAACCTTGCACTCAGGGGGCTGTTGGATTGGCAATATGGGTTCCCTCAGTGACAAACCAGACGAAGGA GAGTGATACACCTGATACAAGAAACTCAGCAAGAGGATATTCTTCAATTTTGCGTGCTGAAGATAATGAAGGTAACTGGAGAGAAGCCCACAACGGGGAT GGTTTAGAACTCGGTGTTATTGAAGATGCTGCTAATCTTGAATTAGTTGATGAGGAACTGCTTCTGGAAAATCTTAAGGTCTCTCAGGCCATGTCTAAGA ACTATCTGAAGGTTTTATCATCTGTAACCCTGAAAGATGCAATCAAATGCATTCGTGACAGCCAGCAGAATTGTGTGCTAGTGGTTGACGAGGAGGATTT TCTAGAAGGAATATTGACATACGGTGACATTAGAAGGTGTCTGCCCGAGAACTCTAGTGATACTTCCAAGAGTGGTTCAAGGCTTCTGGATGACACATGC CTTGTTTCTTCTGTTTGTACTCGAGGGATGAGCTACCGCGGACGAGAGCGTGGACTTCTAACATGTTACCCAAATACTAGTTTGGCTATGGCCAAAGAGG TAATGGAGGCCAGGGGTATTAAGCAATTACCAGTGGTTAAACATGGTGTAGATCAAAGTCGAGAGCGGAAGCGAAGAGTCGTTGGTCTTCTTCATTATAA CGCACTATGGATTTGTCTCAGGAAAGAGATTAATCACAGGAAGTTAGCCTATCAAAATAGGACAGAAAAGAATGTGGCTGTGGTAACTATAAATGGACAT TAACTCTGATCAAGAAGCTTCATGTGAAAAAAATTAGTAAAGCCAGGTTGTAGAAATTTGCACTTGTGAAGTTAAAAGTAGAGACTATGTAAGTTACATG TATATTTTTTAGTGCCACAAGTTGGGTTATATTTCATAAGAAACTAAATATTTCCAACCCTCACGCGTTAAGGAATCAATCCATCCAAATCAACCTCATA TTGAGTTTTAATATAAGGTTTACTACATGGATCGAATGATGATTTTATCGTAAATCACGTTTGTTGACTTTACGAAGCAAATGACTAGTTGAATACAATG GGAGATAAAAATTGAGTTCAAACCAAAATTATATATACTCAACATGCCCATTTGGCTTCAAATTCATTGTAATTCTCTCCTATATCTTTCTTGAACTCTA TTTGTCTATATGAATTGAATTATCT
• Tissue: pods
• Gene name: LI_gene_179117;
• Additional information: details;

Expression of Ll_transcript_449217

FPKM

• PAB: 0.6
• PNAB: 0.9
• PS1: 0.5
• PS2: 0.8
• PS3: 0.9
• PW1: 0.8
• PW2: 1.3
• PW3: 1.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_449217

• Blastp: Chloride channel protein CLC-f from Arabidopsis with 75.47% of identity
• Blastx: Chloride channel protein CLC-f from Arabidopsis with 89.47% of identity
• Eggnog: chloride channel(COG0038)
• Kegg: Link to kegg annotations (AT1G55620)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421073.1)
• Pfam: Voltage gated chloride channel (PF00654.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;