Ll_transcript_377290

• Id Trinity: TRINITY_DN50706_c7_g1_i3
• Name Transcript: Ll_transcript_377290
• Sequence: CTTGTTTCCTTTTAGAGTGTACGGTTGCGTGCATCTACCCTCCACACACCCCACTTGGTGGGAGCCTCATGCAGTGGGACTTCCTTTTTATCAGATGGGT AAATGGGTTAAATATTGTTTATGCATCAACCTGACTGAAGGGGATGGTTTGATGCAGCCTTCGGTATCATCTGCTGCATCCAGACTACTTATATTACAGA ATAAGGGAGTTGCAGAAGAATTTCAAGCTTCGTGTAGTTTTATGCCATGTCGATGTGGTCAGACCCCTGTTATATACTTATTCAAACCTCTAGTTGCATC TATTTTGGTTTATGTTCACAAATGATTCCATTGTCTATATGAAGTGACATTTTCCTTATTTATTTCTTATTGGTCGCAGGAGGATGTGAAAAAGCCTCTA CTTGAAGTTACAAAAACAGCTCTGCTTCATGAATGTACCCTCTTATGTGCATGGAGCTTGGAGGAATGTGGCCGTTACTTGGAGACCATAAAAGTCTATG AAAACAAGCCTGCAGACATTATTCAAGGCCAAATGGATACAGATTATCTATCACGTCTAACACATGCTCTTACGACGGTTCGCCATGTTAACAAGACTGA TGTTGTCACTCTTGGTACTACATTTGGGTCTCTATCTCACGTTATGGGTGCATCTATGGAAGATTTAGCTCGTTGCCCTGGCATAGGAGAGAGAAAGGTC AAGCGCTTGTGGGACACGTTCCACGAACCTTTTAAGCGTGTGGAATCCAGTAGACAACCTATTCCAGAGACTTCTGTCCAGAACAATCCAGCTAGTCTAG ATACATCAATCAGGAACAATGCTGAATCTTCCTCCGTTAATGAAGAGAAGCAAAAGGATGTAGAAGATGTGAGCAAACGTAGGAAGAAAGAACCTGAACT TTCCGTGAAATCTGCCCTCTCTGTGGCTTTTGCCAAATATTCCAACAGAGTTGGAAAGAGGAACAGCACTTCACAAGTCAAGGGAAATGGAGAGCAAGAA GCTGAAACATAAAATTACCATTAAGTTTTATGCTGATTTGTTAATTTTCCCTTGAGCAAGGCAGTCACGTAAAAAACATGGAACTCTTCTTTGGTTTAGA AGCAGTATGGGCTCCTTTAAATTTTATTGATTCTGGAACTTGCCCTTCCCTGCACATATAGGTTTGTGCTGATCCAGACGCAGATTCAGAGTGAGATCCT GAAGATTTAAATTTAAATACTGATTACTGTGTAATAACTTTGTAACTTTACTGGCAAAAGACAATAAAAAATGTATTATTACATGAAGAGATATCTGTGG GACGTGGTAAAGGACATTTGGCCCAATATCCTGGTTCTCTGTTACAAATGGTAATAATTTCACGTCATTCAGTTTTGGCTCCTCCTCTGTTTGGTCTTCC TTATAAATTTATCTATCTTGAATCTGAGGGTTGGTTGCCAGGATCATTTTGCTTGATGTTTTATCCTGGATAATCCTGGAAATATCTATTGAAATGGCCT GAAGCGGTTCCTGTTGTGCTTTCAAGCATTTTGGGGAATCCCTCACATTCAGCCAAGGAAATAGTGAGTCCAAACTCCAGACAGCAGGGGTAATGGAATT CAACTGTTCAAAGTTGGCTATTTGCTGATTCCCCCATCAAGTATGAAATTGCGTCCCCCTACTATCTCATTACAAGAATGAAAAGCACTTGCTTCTAGGG CAGCAGCTTCTGCTATTCTCAAGCAGGACAGTGAAGAAGCATGATGCAGTCCTAATGACTGGGACTAGGACTAGGTGTTTGTCTTTGAAATCTCAAGGAA CTTGTGCCTAGAGAAGATGGGTTCCTAACTAGTGGTATCAGTGATTGTGCAACATCTGTCATGAGGGGCCTGTAATCAGCTTCTGGCTGTATGCACATTG CTGCAATGGCAGCTACCTGTAGAACCCCACAGTAGCAGAAAGAATATGGTTAGTTATCAGGAATAGTGTGAGTAGTCTATTTTTTATAGGCAGAGTTCTG TTTTCTTTCTTTTTTTAAAGGGGAGGGGGTAGAGCAACTATGGAGGTTTAAACCCAGACGCCCACTCTTAATGTCATGCATATCTACAATTGATCTTGAG GACAATAATATGAGCAGTCTAAGTCATCAAGGATAATATAAGTGAAACAATCACTAATCAATCAAA
• Tissue: pods
• Gene name: LI_gene_179284;
• Additional information: details;

Expression of Ll_transcript_377290

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0.3
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_377290

• Blastp: DNA excision repair protein ERCC-1 from Arabidopsis with 59.44% of identity
• Blastx: DNA excision repair protein ERCC-1 from Arabidopsis with 63.73% of identity
• Eggnog: Excision repair cross-complementing rodent repair deficiency, complementation group 1 (Includes overlapping antisense sequence)(COG5241)
• Kegg: Link to kegg annotations (AT3G05210)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427809.1)
• Pfam: Helix-hairpin-helix domain (PF14520.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;