Ll_transcript_377298

• Id Trinity: TRINITY_DN50706_c7_g1_i9
• Name Transcript: Ll_transcript_377298
• Sequence: GCCGAAGCCATAGTAAGGGAAAGGAAGCAAGATGGAGAAGGAGGAAGAGAACAATAGAAATAAGAAGAAGCAAGTAATCACAATACCTTCATATGAAGAA GTAGTTTCAAGTTCGCTATCGAAATCAACTCCTCCCTCTCTCTTCGTTCCTTCTCACTCTCAAACGCAAACATTCTCCGAAGCTTTTTCGTTTCTCAAAT CATCCGAGTTCTACTCTCCACCACCACCTCCACCTCCTACCACCACCGCCCCTTCGCCATCTTCTTTATCAAGGGAAAGTGCACCGTCTTCAACGTCCAC GTCATCTGCTTCTGCGGTTCCTGCACCTTCATCATCTCAAAATCGCAATGCAATCCTTGTCAGTAACAGACAGAAGGGAAATCCGTTGCTCAAACACATT AGGAATGTTAAATGGATATTTGCTGATGTTGTTTGTGATTACTTGCTTGGCCAAAGCTCTTGTGCTCTCTATATCAGCCTTCGGTATCATCTGCTGCATC CAGACTACTTATATTACAGAATAAGGGAGTTGCAGAAGAATTTCAAGCTTCGTGTAGTTTTATGCCATGTCGATGTGGAGGATGTGAAAAAGCCTCTACT TGAAGTTACAAAAACAGCTCTGCTTCATGAATGTACCCTCTTATGTGCATGGAGCTTGGAGGAATGTGGCCGTTACTTGGAGACCATAAAAGTCTATGAA AACAAGCCTGCAGACATTATTCAAGGCCAAATGGATACAGATTATCTATCACGTCTAACACATGCTCTTACGACGGTTCGCCATGTTAACAAGACTGATG TTGTCACTCTTGGTACTACATTTGGGTCTCTATCTCACGTTATGGGTGCATCTATGGAAGATTTAGCTCGTTGCCCTGGCATAGGAGAGAGAAAGGTCAA GCGCTTGTGGGACACGTTCCACGAACCTTTTAAGCGTGTGGAATCCAGTAGACAACCTATTCCAGAGACTTCTGTCCAGAACAATCCAGCTAGTCTAGAT ACATCAATCAGGAACAATGCTGAATCTTCCTCCGTTAATGAAGAGAAGCAAAAGGATGTAGAAGATGTGAGCAAACGTAGGAAGAAAGAACCTGAACTTT CCGTGAAATCTGCCCTCTCTGTGGCTTTTGCCAAATATTCCAACAGAGTTGGAAAGAGGAACAGCACTTCACAAGTCAAGGGAAATGGAGAGCAAGAAGC TGAAACATAAAATTACCATTAAGTTTTATGCTGATTTGTTAATTTTCCCTTGAGCAAGGCAGTCACGTAAAAAACATGGAACTCTTCTTTGGTTTAGAAG CAGTATGGGCTCCTTTAAATTTTATTGATTCTGGAACTTGCCCTTCCCTGCACATATAGGTTTGTGCTGATCCAGACGCAGATTCAGAGTGAGATCCTGA AGATTTAAATTTAAATACTGATTACTGTGTAATAACTTTGTAACTTTACTGGCAAAAGACAATAAAAAATGTATTATTACATGAAGAGATATCTGTGGGA CGTGGTAAAGGACATTTGGCCCAATATCCTGGTTCTCTGTTACAAATGGATCATTTTGCTTGATGTTTTATCCTGGATAATCCTGGAAATATCTATTGAA ATGGCCTGAAGCGGTTCCTGTTGTGCTTTCAAGCATTTTGGGGAATCCCTCACATTCAGCCAAGGAAATAGTGAGTCCAAACTCCAGACAGATTTGAAGA TGCTAATCAAGAATGTTTTTTGTAGTATATCCCTAACAAATACCATTGCTCAAGTCAAATGTGATGCCATAAAGTATAAAGAAGTCTGAATATATTAAGG ATGTCATGAATGTCATGTGATATGTTGTAACTTGTAAAAGTCTTCTCTCATTTAAATAACTTGTTTCTTGTG
• Tissue: pods
• Gene name: LI_gene_179284;
• Additional information: details;

Expression of Ll_transcript_377298

FPKM

• PAB: 3.5
• PNAB: 4.2
• PS1: 6
• PS2: 6.1
• PS3: 8.3
• PW1: 5.6
• PW2: 8
• PW3: 10.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_377298

• Blastp: DNA excision repair protein ERCC-1 from Arabidopsis with 64% of identity
• Blastx: DNA excision repair protein ERCC-1 from Arabidopsis with 72.26% of identity
• Eggnog: Excision repair cross-complementing rodent repair deficiency, complementation group 1 (Includes overlapping antisense sequence)(COG5241)
• Kegg: Link to kegg annotations (AT3G05210)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427809.1)
• Pfam: Binding domain of DNA repair protein Ercc1 (rad10/Swi10) (PF03834.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;