Ll_transcript_377448

• Id Trinity: TRINITY_DN50726_c0_g1_i16
• Name Transcript: Ll_transcript_377448
• Sequence: CATGAAATTACAAAACTTGGGGGGGTTTTGTGGTGTTTTAAACGACACCGTTTTTTATCCAGAAAGAAAAAGCATTAAACGACCCGTACCTACACAGTGA AGAGTTTCCTTGATCATCTCCAACAACAACTGAAAACTCCAAAACGCCGCGTCAAATCATCTCCGATGGCTCAAAACTGCTTACCGCCGGTTCTTCTCAC CGGAAGTGGCCGTCCGGTACTTCTCCCAAACGAAATCGAGTGTTTCTTCCTCTCTTCTGTTGACCTTCTCTGCGAAGACAACGAACCTAACGCTAATTTA TTCCCTCATCTCAAATCGGGTCTCCTCACCCTCACCACCCACCGCCTCATATGGCTCTCCGATTCTCCCTCCGCTTCCGCATTCAGTGTCCCCCTCGCCA CGATCTCCCACATCTTCTCCCACAAGAAGTCCCTCAAGTCCGTGTTCGCTTCCCCTAGGGTCCGCTTCCAGGTGTCTCTGTCTCCCGAAGGTACGGTTTC GGCATCGGGTTCGAGGTCGGTTGTGGCGACGGTCGTGATCAGAGGGAAAGGGGACTGCGACGCGTTTTTAGCCAAGTTTTGGGAGAATTGGAGGGGCAGG GCGTGGGAGGAAGCAGAGAGTGTTTCGGGTTCAGGTTCAGGTTTGGGTTCGAATGTGGCGCCAGCAGCGTCTTCAGGAGGGTTTTATTCGAGTGACGGGA CAGTGAGGATGGTGGGAGTGTCGGGGATATTGAGGAAGCAGCAGGAGATGTGGGAGAGTACTGATAGGAGCTTGCATGAGGCTTTTCAGGATTTGAATGC TCTCATGAGCAAGGCTAAAGAGATGGTGATGCTAGCAGAAAAAATGAGGACACAACTTTTGTCTGGCTCAAGTTCTCAAGCTAATACAACTGGTGATGAG CAGATGGGTTCAAAGGAAGAGATGCAAGAATTGTTATTGAGTGTTGGTATTATATCCCCTGTCACCAAAGAGTCCGCAGGTGCTTTGTATCATCAACAGC TATCTCGTCAGTTGGCAGATTTTGTCAAAGTTCCACTTGAGAGAGCTGGAGGAATCATCAATCTTATTGATATTTATTGTCTATTCAATCGTGCTCGTGG CACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCCAGTAGTTCTACGTAAGTTCGATAGTGGAGTCATG GTAATACAGACAAAGTCCCACAGTGATGAACAGGTTATCTCTAAAATCAAGATACTTGCTACGAAGCCTGATGCTCTTCGATCTGGGATAAGTGCTAGTG ATGCTGCAAAGACACTGGGAGTTGCCCCAGCAATGGCAAAGGAGCATCTCATGTCTGCTGAGAGCAAGGGTGTTCTATGCAGAGATATAAGCCCTGATGG ATTTCGCTTTTATATTAACTTGTTCCTTGAATTTGATCGAGATGATAAGTATTCGTAAGTAAACTCTCTACTGCTCTATATGTAGTGTTGTCTTCTTGAT GTTGTGGCCAAATTGGTTACCCCACTGAGCTAAACTTTTTATGTACCGAGACTACATTATTTGGTGTTTGTTCAGTATTCCTTGTCTCTCTGTTTTGGTT TATCTTTCCAATTCGCGTTTATTTTTTTAATTGTAAATTTTTAATATGTGAATCATGCAATAGTTGTTGAATTCCTTCACCATAAGAAATTTTAATTTAT TTTTTGAAATGTTTCACATATTCCTAAAAACTTTGGAGGATCTATCCTCTACTAAAACTACCTGTTATAGCATGTTAACTTCTGTTAACTTGAGGAAGGA AAAAAAGGTTTGGAGTCACAGAACAAGTGCCATCGGATCTACTGGACGAGGTTCTCGCCATTGGTGCTCAGGTGAGGGGAAGCAAAGGAAGTTATCCTGG AGCGTAATGGCGATATATTGAGACAGAATTGGAGGTTATGACAATCATGATGGATCCGGCAGCAGTGAAGTCGTGATGGAACCAGCAGTGCTGTGGCCTT GTAACCAACGGTGATGATCCCCTCCACAGGTCACCTGTAATAATATCAGCTGTGGATCATTTTTTGGATATCAAAAGTTTCTGCTTAATGGAGGATCGGT ACACCAGAGTTTTTTTGTAGTATGTGAAACATTTCCTTCACTTCCCTACTTGAAATGTATGGAATAGTGTATGTTATGCTCCACTTTTTTATCCAGCAAT ACTGACTCTGCACTCTAGCTTTCTGCTTTTTAGCCGCTCAAGAGTAAATCCCCCAGTTCTTACATTGCATTGGTTTTTAATTTGATGTTTCGATCATAGA TTATTTTGTTCATTGATTTCATAAGCATGTGTTCTTTTCTGATACAAGTGTTGCTTACTGCCATTTATACAGAGTGAAAGACCAAGGGATTTATGCGTCA TGGGTCAAGGCAAACCATGCTCGTGGGTAGAGTTGCAAGCCTGTTCAAGGCAAGTAAATTTAAGAGAAAATTAACAGGTTGAAATTGTTGTCAAGGTTAA CATTAATGATTTCAAATCAAGCACCACATCCTATCAACAAATTGAACAAGTGTCTTTTAATATGGTATTTAAATGTTGCAACTTTCAACTGACCCAGTTG AGGAAAGCATGTTGAAGGAAGTAGTTTTGATAATTTTTTCACTGTACCATAATGTACAGTTGAGACTTGAGACATGTTCGACTTAAAATATTGGTATGAG GCTATTGCAATTCATAAACATTGCTCAATACATAGAAATGTTCTAAGGTCATCAAAATAAGAAACGCTTTCAGAACGCTCTAACCCCATCTTGTCACTCA TTCCTTTCTCACACATTTGAGAGTTAGTGTGGAATTGCATGGTGTAGCTTGTATTTGAATGAAGCTTTTAATTTTATGTGAAGCATATGAAACTTCTGCT TCTGATATAAGTGAATTACAGTGAACAGTATAATGGATCTGTCACTACATTTCAACTGTAGTCATAGTTCAGTTAATTAATATCATGGAAATATTGCCAA TGTTATAGATGTGTAATGAAAGCATGTACAATTCATAGACATACCCAACATCATATTTTTATCAAGGACTTGGATCTTCTAGAGGATTCTTAAAAA
• Tissue: pods
• Gene name: LI_gene_179422;
• Additional information: details;

Expression of Ll_transcript_377448

FPKM

• PAB: 0.4
• PNAB: 0
• PS1: 0.6
• PS2: 0.2
• PS3: 0.4
• PW1: 0.4
• PW2: 0
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_377448

• Blastp: Vacuolar protein sorting-associated protein 36 from Arabidopsis with 65.78% of identity
• Blastx: Vacuolar protein sorting-associated protein 36 from Arabidopsis with 65.3% of identity
• Eggnog: vacuolar protein sorting(ENOG410XR74)
• Kegg: Link to kegg annotations (AT5G04920)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449356.1)
• Pfam: Vacuolar protein sorting protein 36 Vps36 (PF11605.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;