| Id Trinity | TRINITY_DN50726_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_377437 |
| Sequence | ATCTACTACAATTGGTGACGAGGAGATAGGTTCAAGGGAAGAGATGCAAGAATTGTTATTGAGTGTTGGTATAATATCCCCCGTCACCAAAGAGTCTGCG GGTGCTTTGTATCATCAACAGTTATCTCGTCAGGTTCTCTTATCTAACCTCCTCAGTTACATGTTATTTTTAAACTTATCAAATGATCATGCAAATTGTA AGAGCTTTTGAAAATGATTATCTTATAAAAGATTGATTTGATCTAACCAGTAAACAATTCAGTTTTTTTAATTAATGAATAATTTTATTCCTGCTATTTT TAGTGGGGAGCCTTGGCGCAAAGATAAGGTTGTTGTTTAGCGACGAAGAGGTGATGAGTTCAAATCTTGGAAAGAGCCTATCTGCTTGCAAGTTTAGGCT GCATACATCTACCCTTCCCAAACCCCACTAGGTGGGAGCTTGTGCACTGGGCTACCCTATTTTTAATTGGGAGGTTATCAGGACTTGTGTTCAGTGAGCG AAATGGGAACATTTAAGTTCGGCTAGTATGACAGGAACTCAGGAATAATGAAGTATTCATAAAATATGATCCATATCTTAGTGAACATGTTGAGATGAAT CTGCTTTTGGTGATGAGTGATGAGAAGGAAGAGCCGACAGCAGGGTAGTATCAACGACAGCTGGTATTGAAGAAAATCTAAAAATACTAGAAACCAAGCC AAGAAGGATTAACATGAGAGTAACAATGTTGGCAGATTTTGTCAAAGTCCCACTTGAGAGAGCTGGAGGAATTATCAATCTAATTGATGTTTATTGTCTA TTCAATCGTGCTCGCGGCACAGAATTGATTTCACCTGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTTTCATTGGTTCTGCGTAAGT TCGATAGTGGAGTCATGGTAATACAGACCAAGTCCCACAGTGATGAAGAGGTTATTGCTAAAATCAAGATACTGGTTATGAAACCTGATGCTCTTCGACA TGGGATAAGTGCTAGTGATGCTGCAAGGACACTTGGAGTTGCCCCAGCAATGGCAAAGAAGCATCTCTTGTCTGCTGAGAGCAAGGGTGTACTATGCAGA GATATAAGCCCTGATGGATTTCGATTTTACATTAACTTGTTCCTTGAATTTGATCGAGATGATATGTATTTGTAAGTAAACTAGAACTGCTTGATACGTA GTTTTGTCTTCTTGATGTCATGACCAAATCAGTTACCCGGTAGAGCTAACTGCTTTCTGTGCTGAGAAGTACACTATTTGTCTTCTTTATCCAGCGATAC TGACTTTGCAGTGTAGCTTGATGCTTTCTAGTTGCTCTAGAGTTAAATTCTGAGTTCTTACATCACATTGGTTTAAACTTGTCGTGCTAAAAGTATTACT TAGTGCCATTTATACAGAGTGAAAGATCAAGGGCTTTATGCCTCATGGGTAAGGGCAAACCATGCTCGTGGGTAGATTTGCAAGCTTGTTCAACCAAATT TAAGGTGTCAAGACCCTATTGGACTGGTTAAGGGAGATAGAGAAAAGTGGTGATCTTCACTCGTCTCAAGGTTAATATTAATGATTTCAAATCAAGCACC TCATCATATCAACAACAAAAATCGTGTTAACACGTGCAGTCTGCCAAATTGGAGTGGTGTATTTTAATATGGTATTTATATGTTGCAACTTGCAACTGAT CCAGTTGAGGAAAGCATGGCGGAGGCAGTAGTTTTGGTAATTTTTTACACGGTACCTTTATGTACATTATAGACATGATTTGCATGAAATTGTTTATTAC ATAGAAATGTTTGGAAGTTATCAAAATAAGAGAAGTTTTTAGTCATGCTCTCAATTGGCCAAACTACCTTGCTTCTCTTTTATCAATTTTAAAGCGTTGG GAATGTTAACAAGTGCTCTAGGATCATTGTTTATGGAAGAGGAATTAGAAACTGTGTTGAAAAATGATGTTTTCATATATGAACTCTGCTTTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_179422; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_377437
| Blastp | Vacuolar protein sorting-associated protein 36 from Arabidopsis with 70.27% of identity |
|---|---|
| Blastx | Vacuolar protein sorting-associated protein 36 from Arabidopsis with 70.27% of identity |
| Eggnog | vacuolar protein sorting(ENOG410XR74) |
| Kegg | Link to kegg annotations (AT5G04920) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453473.1) |
| Pfam | EAP30/Vps36 family (PF04157.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |