| Id Trinity | TRINITY_DN50726_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_377439 |
| Sequence | AGGATTTGAATGCTCTCATGGTAGCATTTGGAGCCAGAGGAAAAACAGAGCAGAAGGGACTGCCCTATTCTGTTCTCTTCGATTCAAGATTGCAGGAATG CACGAATCTCTTTGTAAATCTGAATGTTTATCATGATTTTCTTGGGCCGAGTTACAAGGAAACCCCTACCTAGTGAGAAGGGTCTTTTATTATTGCTGTT GATGATAATGAGTTACAAGGACATCTTGGAATGTTTGTAGATACAAACTGCATGTTTATCATGCTCATGGAAGCACTCTAAACAATATTTTCCCTACAAT CTAATTACTCAGAGCAAGGCTAAAGAGATGGTGATGCTAGCAGAAAAAATGAGGACACAACTTTTGTCTGGCTCAAGTTCTCAAGCTAATACAACTGGTG ATGAGCAGATGGGTTCAAAGGAAGAGATGCAAGAATTGTTATTGAGTGTTGGTATTATATCCCCTGTCACCAAAGAGTCCGCAGGTGCTTTGTATCATCA ACAGCTATCTCGTCAGTTGGCAGATTTTGTCAAAGTTCCACTTGAGAGAGCTGGAGGAATCATCAATCTTATTGATATTTATTGTCTATTCAATCGTGCT CGTGGCACAGAATTGATCTCACCTGATGATTTGTTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCCAGTAGTTCTACGTAAGTTCGATAGTGGAG TCATGGTAATACAGACAAAGTCCCACAGTGATGAACAGGTTATCTCTAAAATCAAGATACTTGCTACGAAGCCTGATGCTCTTCGATCTGGGATAAGTGC TAGTGATGCTGCAAAGACACTGGGAGTTGCCCCAGCAATGGCAAAGGAGCATCTCATGTCTGCTGAGAGCAAGGGTGTTCTATGCAGAGATATAAGCCCT GATGGATTTCGCTTTTATATTAACTTGTTCCTTGAATTTGATCGAGATGATAAGTATTCGTAAGTAAACTCTCTACTGCTCTATATGTAGTGTTGTCTTC TTGATGTTGTGGCCAAATTGGTTACCCCACTGAGCTAAACTTTTTATGTACCGAGACTACATTATTTGGTGTTTGTTCAGTATTCCTTGTCTCTCTGTTT TGGTTTATCTTTCCAATTCGCGTTTATTTTTTTAATTGTAAATTTTTAATATGTGAATCATGCAATAGTTGTTGAATTCCTTCACCATAAGAAATTTTAA TTTATTTTTTGAAATGTTTCACATATTCCTAAAAACTTTGGAGGATCTATCCTCTACTAAAACTACCTGTTATAGCATGTTAACTTCTGTTAACTTGAGG AAGGAAAAAAAGGTTTGGAGTCACAGAACAAGTGCCATCGGATCTACTGGACGAGGTTCTCGCCATTGGTGCTCAGGTGAGGGGAAGCAAAGGAAGTTAT CCTGGAGCGTAATGGCGATATATTGAGACAGAATTGGAGGTTATGACAATCATGATGGATCCGGCAGCAGTGAAGTCGTGATGGAACCAGCAGTGCTGTG GCCTTGTAACCAACGGTGATGATCCCCTCCACAGGTCACCTGTAATAATATCAGCTGTGGATCATTTTTTGGATATCAAAAGTTTCTGCTTAATGGAGGA TCGGTACACCAGAGTTTTTTTGTAAGTGAAAGACCAAGGGATTTATGCGTCATGGGTCAAGGCAAACCATGCTCGTGGGTAGAGTTGCAAGCCTGTTCAA GGCAAGTAAATTTAAGGTATGGACAATTTTTAAGTTTACTTCTCTAGCAATTTTTTGTGTAATTTACTCCTTTATTGGCTTTAGCCATCCTGTTTTTCTC TCTTCAGGATGTCATTCTATACTTCTAACTTTACATTTTTCCTTTTTGCTAAGAGAAAATTAACAGGTTGAAATTGTGATCAAGGTTAACATTATTGATT TCAAATCAAGCACCACATCCTATCAACAAATTGGACTAGTGTCTTTTCATATAATATTTATATGTTGCAACTTGCAACTGACCTAGTTGAGGAAAGCATG TTGAAGGAAGTAGTTTTGATATTTTTTTTTTCTCTGTACCATAACAGTTGAGACTTGAGACATGTTCGACTTAAAATATTGGTATGAGGCTCTTCCTTAA AATATTGGTAAGGAAGTGTGTTTCTTTACATACTTCTTGAAGAGAATGGTTGTTTATGTAAATGTTATTTTTAATAATGCACTTTAGATTTGTATGCAAA ATATGGGTCTTTGGTGAATGCACATAAATTGTTTGTGAAAATGCCTACAAGGGATGCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_179422; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_377439
| Blastp | Vacuolar protein sorting-associated protein 36 from Arabidopsis with 75.61% of identity |
|---|---|
| Blastx | Vacuolar protein sorting-associated protein 36 from Arabidopsis with 76.19% of identity |
| Eggnog | vacuolar protein sorting(ENOG410XR74) |
| Kegg | Link to kegg annotations (AT5G04920) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449356.1) |
| Pfam | EAP30/Vps36 family (PF04157.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |