Ll_transcript_377564

• Id Trinity: TRINITY_DN50727_c0_g1_i14
• Name Transcript: Ll_transcript_377564
• Sequence: GTAACACTAGAGAGAACAACGAAGGAAAATGACATATTTTTGAAGAGGAAAAAAGAAAAAGGGGGGACTTAATGACTAAGTGTGAAATACGTTTGAATGA TTCACAATCCTCATCCATTTAATTTAGTCATTTCCAGTCAACATAGTCCACAATCTCAGTCAAATTCATACAAATCTGAGAAAGCTATAAAACCAAGAAA AAAACACGAAATCAAACCTCTTCACTCTTTTTTCTTCGATTAGGGTTTCCCTCCCAATTTCACCACATTCTCTCTTTCTTCAATGGCCGACCCCATTAAC ATCACCTCTGATTCCCTACCCCAATCTCCCTCTCCCCCCGCCGTCAACGACGATCTCCCTCCGCCACCTCATCCTCCGCAGATCCACCCGTCCAGGCGGA GGGACCGCCGTGACGACTATCGCCGTGATTACCATGACCGCAACTTGTCCCCTAGGGACCACCGCGATAGGGACTTCAAGCGCCACCGCAGCCCTAGTCC TAACTACCGTGACCGCCGCTATTCTCCTCCCCCGCCTTCACGGCGCTCCCCTCCTCAGTTTAAGCGCAACAGGAGGGGAAGCCCCCGCGGCGGCGGTTAT GGCCATGATGACAGATCTGGCTATGATTATGCTGGTGGCTATGAACGAGGAGGTGGAGGAAGGGGCGGAGAGAGGTCTTATGGTGGAAGATTTGGACATC GACCTGCTGGACGATATCAAAATGGAATTTCTGATGTCAATCGCAGTTATGCAGGCTTGCCAGGTGGTGGTGCACAAAGAGAGGGGTTGATGTCCTATAA GCAATTCATCCAGGAGCTTGAGGATGATATTCTGCCATCTGAAGCCGAGTCCAGGTATCAAGAGTACAAATCAGAGTATATTTCTACTCAAAAGCGAGCT TACTTTAATGCTCATAAGAATGAGGAGTGGTTGAAAGATAAATATCACCCGACAAATTTGCTGACAGTAATCGAAAGGAGGAATGAAAATGCCCGAAGGC TGGCAAAGGATTTTTTGCTTGATTTGCAAAGTGGAACGTTAGACCTAAATCCTGGTTTAAATACCTCTTCATCCAGCAAATCAGGGCATGTAAGCGAGCC ACATTCAGAGGAGGAAACAGATGCTGGTCTTAAACGGAGAAGACATGCAAGGGAACCTAATAAAGATAGTGATTTCCTAGCTGCTCCAAAGGCTCACCCT ATTAGTTCTGAACCTAAACGCATACGACAGGATATTCAACAAGCCCAGGCTGTAGTTCGAAAGCTTGACATGGAGAAGGGAATTGAAGATAATATTTTAT GCACAAGTGATCACACCAAAAATGATGATAAGGCTCGCACTGGATCTGTTGGCCCCACAGTAATTATACGGGGCTTAACATCTGTTAAGGGCTTAGAGGG TGTTGAGCTACTTGACACACTTATTACTTATCTTTGGCGGGTTCATGGTGTAGATTATTATGGCATGATTGAGACAAATGAGGCTAAGGGTTTTAGGCAT GTGAGACCAGAAGGAGCTGGACCTGAAGAAAAAGGTAAATCAGGGTCTGAGTGGGAGAACAAAATTGATTCTTTTTGGCAGAAAAGGTTGAATGGCCAGG ATCCTTTGGAAGTTAGGACTGCTAAGGAGAAGATAGATGCTGCAGCAGTTGAATTCTTGGATGCATATGTGCGAAAAATTAGGGATGAAAAGTATGGGTG GAAGTATGGTTGTGGGGCTAAAGGCTGCACAAAGCTTTTTCATGCTACCGAATTTGTGCACAAACATCTGAAGCTAAAACACCCAGAGCTTGTCACTGAT CTGACTTCAAAATTGAGCGAGGATCTTTATTTCCAAAATTACATGAATGATTCAGATGCACCCGGAGGAACGCCTGTCATGCAGCAACCTCAGAGGGTCA AGTCTCTTAAGCAAAGGTTAGGAGGTCTGGATGGCCGACTGAAAGATGATCGTGGTAGTCGGCGAGATCATGATAGGAGTGACAGAATAAATGGAGATAG GCCTGACAATTCCCCATCTGGTGAGAGGCAGTTGGGAAACCATGATGAAGAAATGTATGATGCTTATGGCGGGCCTGCTGTACCTCAATTTACCTCAGAT ATGCCCCCTCCTCCCCAAGTTTTGATGCCTGTACCTGGGGCTGGGTTGGTTGCTCTTCCTATTCTTCTGACTCTGATCCACTTTGGTATTGTTTTATTGA GATTTTATTGGTACTTACATAATTTGTAACCCTACAGGCCATTGGGACCTTTTGTTCCTGCTCCACCGGAAGTTGCAATGCAGATGTTAAGAGAGCAAGG GGGCCCACCTTCATATGATGCTCCTGGTAGGAAGATGCGTTCTGGTCCTCATGTGGGTGGGTCAGCACCAATAATTGCTGTTCCTCCCGCTTTTAGACCA GATCCTCGACGGATGCGCAGGTAAATGTTCTGCAGGACCCTTGATCATATGTTCAATTATGATATCTCCAAAACATGCTCTACCTCTTTTCTGCTCATGC ATGTGATCTTTAGACTGTCTGCATTTCAATAACATAAAAGGTGTAGGTAGAAAGAGGAAGGCATAATTTGTTTTCACCGTAACTAATGGTCCTTGTAACC ATTGATGTTGGGTCCGTGCACAAAACTTGTATCTATCTCTCTTCAACATGACTGGATCTTAATCCCACTTAACATATGTGTTTGTTATCTGTCATTAACT TTATTCTGTTGGTGTTGCAGTTATCAAGATCTGGATGCCCCAGATGACGAAGTCACGGTGATAGATTACCGGAGTTTGTAGGTGTCTTGGGTTTCTGTAA TTTCAATGAGATCAGCAGTCTGACTGTATTAATGAGATTATGCTCCATTTTCTTTTGTGAATTTGTTTTGAGGATTTTATCTGTTTTATATGGTGTGAAT TTGAGAGGAAATTGACTTAGATATTGCACTGGAATTTCATTCTGATTGACTTGCAGATTTCTTGAACCAAAATGTTCCATCTGACTGCATATAAAGACGG TTTTATGTTTGGAGACAGTTTTATTCATCCATTATCACTTTAGACCTACCTTGCAATGCATTTTCTGTTTATAATTTTATAAACCTTATGGGAGAGATAA AGGTTGGAGACCGTACTACGAGTTACAAGTTATTAGATTGAAGTATTTTGGGTTAATCATTAAAGATGGTGGAGGAAATGATGACCTAAACCATAGGCAT TAGGTCGATTGGATGGAATGACAAAATGTTTTAGTTATCATGGGATAGAAATGTATTATTTAAGCTTAATGAGAAGTTTTATTATATAATATAAAATCAA TAACACTACATAATAGGGTGAGCATGATCTGATTCTACCTGTTTAGTTGGTATGGTTCAATCATGATTGAGTCTGAATAAGATTTTATTTTATTGGGGTT TAGGGTTAGGTTCGAATTAAAAAATTAGACCCATACAATATTTAGGGTTGGGTATGATTCAAACATGACCCACCCGACTTATCCATGATTACTCGCTCTT CATGTTTGTATTGTCTATATTCAATTATGTATAAAGTAATGATAACTTTT
• Tissue: pods
• Gene name: LI_gene_179427;
• Additional information: details;

Expression of Ll_transcript_377564

FPKM

• PAB: 0.3
• PNAB: 0.2
• PS1: 0.2
• PS2: 0.1
• PS3: 0.1
• PW1: 1.1
• PW2: 0.9
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_377564

• Blastp: Serrate RNA effector molecule from Arabidopsis with 57.79% of identity
• Blastx: Serrate RNA effector molecule from Arabidopsis with 54.07% of identity
• Eggnog: Serrate RNA effector molecule homolog(ENOG410XR8S)
• Kegg: Link to kegg annotations (AT2G27100)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440877.1)
• Pfam: Domain of unknown function (DUF3546) (PF12066.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;