Ll_transcript_377568

• Id Trinity: TRINITY_DN50727_c0_g1_i18
• Name Transcript: Ll_transcript_377568
• Sequence: GTAACACTAGAGAGAACAACGAAGGAAAATGACATATTTTTGAAGAGGAAAAAAGAAAAAGGGGGGACTTAATGACTAAGTGTGAAATACGTTTGAATGA TTCACAATCCTCATCCATTTAATTTAGTCATTTCCAGTCAACATAGTCCACAATCTCAGTCAAATTCATACAAATCTGAGAAAGCTATAAAACCAAGAAA AAAACACGAAATCAAACCTCTTCACTCTTTTTTCTTCGATTAGGGTTTCCCTCCCAATTTCACCACATTCTCTCTTTCTTCAATGGCCGACCCCATTAAC ATCACCTCTGATTCCCTACCCCAATCTCCCTCTCCCCCCGCCGTCAACGACGATCTCCCTCCGCCACCTCATCCTCCGCAGATCCACCCGTCCAGGCGGA GGGACCGCCGTGACGACTATCGCCGTGATTACCATGACCGCAACTTGTCCCCTAGGGACCACCGCGATAGGGACTTCAAGCGCCACCGCAGCCCTAGTCC TAACTACCGTGACCGCCGCTATTCTCCTCCCCCGCCTTCACGGCGCTCCCCTCCTCAGTTTAAGCGCAACAGGAGGGGAAGCCCCCGCGGCGGCGGTTAT GGCCATGATGACAGATCTGGCTATGATTATGCTGGTGGCTATGAACGAGGAGGTGGAGGAAGGGGCGGAGAGAGGTCTTATGGTGGAAGATTTGGACATC GACCTGCTGGACGATATCAAAATGGAATTTCTGATGTCAATCGCAGTTATGCAGGCTTGCCAGGTGGTGGTGCACAAAGAGAGGGGTTGATGTCCTATAA GCAATTCATCCAGGAGCTTGAGGATGATATTCTGCCATCTGAAGCCGAGTCCAGGTATCAAGAGTACAAATCAGAGTATATTTCTACTCAAAAGCGAGCT TACTTTAATGCTCATAAGAATGAGGAGTGGTTGAAAGATAAATATCACCCGACAAATTTGCTGACAGTAATCGAAAGGAGGAATGAAAATGCCCGAAGGC TGGCAAAGGATTTTTTGCTTGATTTGCAAAGTGGAACGTTAGACCTAAATCCTGGTTTAAATACCTCTTCATCCAGCAAATCAGGGCATGTAAGCGAGCC ACATTCAGAGGAGGAAACAGATGCTGGTCTTAAACGGAGAAGACATGCAAGGGAACCTAATAAAGATAGTGATTTCCTAGCTGCTCCAAAGGCTCACCCT ATTAGTTCTGAACCTAAACGCATACGACAGGATATTCAACAAGCCCAGGCTGTAGTTCGAAAGCTTGACATGGAGAAGGGAATTGAAGATAATATTTTAT GCACAAGTGATCACACCAAAAATGATGATAAGGCTCGCACTGGATCTGTTGGCCCCACAGTAATTATACGGGGCTTAACATCTGTTAAGGGCTTAGAGGG TGTTGAGCTACTTGACACACTTATTACTTATCTTTGGCGGGTTCATGGTGTAGATTATTATGGCATGATTGAGACAAATGAGGCTAAGGGTTTTAGGCAT GTGAGACCAGAAGGAGCTGGACCTGAAGAAAAAGGTAAATCAGGGTCTGAGTGGGAGAACAAAATTGATTCTTTTTGGCAGAAAAGGTTGAATGGCCAGG ATCCTTTGGAAGTTAGGACTGCTAAGGAGAAGATAGATGCTGCAGCAGTTGAATTCTTGGATGCATATGTGCGAAAAATTAGGGATGAAAAGTATGGGTG GAAGTATGGTTGTGGGGCTAAAGGCTGCACAAAGCTTTTTCATGCTACCGAATTTGTGCACAAACATCTGAAGCTAAAACACCCAGAGCTTGTCACTGAT CTGACTTCAAAATTGAGCGAGGATCTTTATTTCCAAAATTACATGAATGATTCAGATGCACCCGGAGGAACGCCTGTCATGCAGCAACCTCAGAGGGTCA AGTCTCTTAAGCAAAGGTTAGGAGGTCTGGATGGCCGACTGAAAGATGATCGTGGTAGTCGGCGAGATCATGATAGGAGTGACAGAATAAATGGAGATAG GCCTGACAATTCCCCATCTGGTGAGAGGCAGTTGGGAAACCATGATGAAGAAATGTATGATGCTTATGGCGGGCCTGCTGTACCTCAATTTACCTCAGAT ATGCCCCCTCCTCCCCAAGTTTTGATGCCTGTACCTGGGGCTGGGCCATTGGGACCTTTTGTTCCTGCTCCACCGGAAGTTGCAATGCAGATGTTAAGAG AGCAAGGGGGCCCACCTTCATATGATGCTCCTGGTAGGAAGATGCGTTCTGGTCCTCATGTGGGTGGGTCAGCACCAATAATTGCTGTTCCTCCCGCTTT TAGACCAGATCCTCGACGGATGCGCAGTTATCAAGATCTGGATGCCCCAGATGACGAAGTCACGGTGATAGATTACCGGAGTTTGTAGGTGTCTTGGGTT TCTGTAATTTCAATGAGATCAGCAGTCTGACTGTATTAATGAGATTATGCTCCATTTTCTTTTGTGAATTTGTTTTGAGGATTTTATCTGTTTTATATGG TGTGAATTTGAGAGGAAATTGACTTAGATATTGCACTGGAATTTCATTCTGATTGACTTGCAGATTTCTTGAACCAAAATGTTCCATCTGACTGCATATA AAGACGGTTTTATGTTTGGAGACAGTTTTATTCATCCATTATCACTTTAGACCTACCTTGCAATGCATTTTCTGTTTATAATTTTATAAACCTTATGGGA GAGATAAAGGTTGGAGACCGTACTACGAGTTACAAGTTATTAGATTGAAGTATTTTGGGTTAATCATTAAAGATGGTGGAGGAAATGATGACCTAAACCA TAGGCATTAGGTCGATTGGATGGAATGACAAAATGTTTTAGTTATCATGGGATAGAAATGTATTATTTAAGCTTAATGAGAAGTTTTATTATATAATATA AAATCAATAACACTACATAATAGGGTGAGCATGATCTGATTCTACCTGTTTAGTTGGTATGGTTCAATCATGATTGAGTCTGAATAAGATTTTATTTTAT TGGGGTTTAGGGTTAGGTTCGAATTAAAAAATTAGACCCATACAATATTTAGGGTTGGGTATGATTCAAACATGACCCACCCGACTTATCCATGATTACT CGCTCTTCATGTTTGTATTGTCTATATTCAATTATGTATAAAGTAATGATAACTTTT
• Tissue: pods
• Gene name: LI_gene_179427;
• Additional information: details;

Expression of Ll_transcript_377568

FPKM

• PAB: 9.5
• PNAB: 13
• PS1: 9.7
• PS2: 8.6
• PS3: 12.4
• PW1: 19.8
• PW2: 18.6
• PW3: 14.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_377568

• Blastp: Serrate RNA effector molecule from Arabidopsis with 59.71% of identity
• Blastx: Serrate RNA effector molecule from Arabidopsis with 59.32% of identity
• Eggnog: Serrate RNA effector molecule homolog(ENOG410XR8S)
• Kegg: Link to kegg annotations (AT2G27100)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440877.1)
• Pfam: Domain of unknown function (DUF3546) (PF12066.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;