Ll_transcript_377729

• Id Trinity: TRINITY_DN50728_c1_g3_i5
• Name Transcript: Ll_transcript_377729
• Sequence: ATAGTCCTCATTACTCTTAAATCTTAGCATTAATAGTTGAATTTAGAAACCCAGACACCCATTTCTCCAATGACCGGAGCAGCAGCATGAGAGCATCACG AAAACACTGCAACTCAGATCACTGAATAGTCAAAATAAAAAATGCACGGTCGTCCTCGCAAACCGTTGAAGCCAGAAGATACAACAGCTTTATCAGCCAA AGCCGAAAAGCTTCGTTCACTTCAATCTCAATTCCTCACCAATCATCACAATCACATGTTACTTCTCTCTTTCTTCCCTCATCATTATTATTACTATTAC TTTATCGCATTATCATTTCCATTTCCATTTCCATTTTTAGTTACACAAAGGAAGCTCTAGATTTGAATGCCAAGTTAGTTGAGAACAATCCAGAGTGGCA CACTGCTTGGAATTACAGAAAACTCGCTGTAAAAAACTTCCTCTCTCCTTCGGAATCTGATCCTGATTACGTCAAATCAATTCTCGATGAAGAACTCAGA GTGGTAGAGTGTGCACTGAGGAAGAATTTTAAATCATATAGTGCATGGCATCATCGAAAATGGGTACTAAGCAAGGGGCATTCTTCCATAGATAACGAGT TGCGCCTTCTGGATGCTTTTCAGAAACTTGATCGGCGAAATTTCCATGCTTGGAACTACCGAAGGTTTGTTACTGCACTGATGAAAAGATCAGATGAGGA TGAGATGAAATACACAAAGGAACTGGTAGACGACAATTTTAGCAATTACTCTGCATGGCACAATCGTAGTATCCTGTTGTCTAATTTGCTGAAAAGAAAG GCTGAAGGATATTTCCCAAAAGAGAATGTTTTGGAAGAGGAGTATGAGCTAGTCCAAAATGCTCTTTTTACCGATCCAGATGATCAGAGTGGCTGGTTTT ATCATCTATGGCTTATTGATCAAACAGTGAAAACAGATGCTCCTATACTCGTTTCATCTTGGCCTTCCCATGGGTCTACTATAACTTTACAGGGAAACAA TTGCCTTTATGGTTCTGGATCATCTGTTGTAAACTGTACACTATCAGACATAGGAAAACTTCCAGTCATTCTTTATTTTAGTCAAGCCGTTGAAGGCATC GACTCATCCACAGTAACTGTTAAATCTGAAGTTTTAAATGGTGATCTGGACTGGAAATCACTTTCAACAAGTAACTCGAATGCTGCTCAAGTTTGGGTTA CATATCTGAATGTTGGAAATATGGAGCTCCAGCTGTTGAAAAATTACTCTGTAGAGATCAGCCTCGGTCATTCTAAGGGTGTTGTCTCTTCAAGTGGATA TCACTTTGGCCATCCTATGCATGTTGCCTTTAAACTGTGTATACAGACTCACTATAGAGAACTTGCTGAAGGACAGTGTGAAAAAAAGACTTCATGGAAT GATAATGATTTCCAAAAATTTGATCATTTTCAGGAATCAGAGTCCATTGTTTCTACTGATCAACTAACTAGTGAGAATGATCACCATAATCAAACAACTT CCAACTGGTGTGTGGAGGCAATTGATAAAGAAGTAGATAAATTTCGAGATTTATTATCAGATTCGGACTGCAAACTTGGAAAGCTTACACTTGCTAGACT GTTGACTGCTCTTGATTCATTGTCATCTACACGTGCCGAGAAAATGGTCAATGCTGATGAAGTTCTTCAACTTTATGGTGATCTGATGAAGTTGGATCCA ACACATTCTCTGTACTACAAGGACAAGCATAGTCTGACATTACTTCATCAGATAACATCAACTAGGGAATCTTTACTACCATACTGCCACTACTACAAAG ATGCAGCAAAGACAATTGCTGGCCATGTTTGTCTAAGATTACAAAATTTATCATTATCACGGATTGGATGCATTGAGAATTTGTTGTGGGTGCAAATGCT AGACCTTAGCCACAATGAACTTCAATCAATTGAAGGATTGGAGGCCATGCAACTTTTATCTTGTTTGAATTTGAGTCACAATAAATTTGGTACTTTTACT GCTCTGGGACCTCTTAGATTGCTTAGGTCACTAAAAGTGTTGAATATATCATACAACGAGATAGGCTCGCACTCTATTGACACAAGAAGATACCTATGCT CTTCTCCTTTGTCTCATACTGAAGAATTTGCATGGGACCGTTTTGAAATCCTTGCCGGCAGCTTCAATGCCACGAAATTTTGGGAAGCTTTCTTGATATT TGGTAGTTTGAATTTGACAGAGTTAGACTTAAAAGGAAACGCAGTCGCTGATGAGAACTTCAGACTATTTCTTGTCAAAGTTTTGCCTACTCTCAAGTGG CTGGATGGTGGAGAATTATCTTGACCTATTATGGCTTTTATGGATGAAATTTTTTCCCCTGTTATAATTTGATGTATGGCACTTTCATCAAGACTATTCA CGCATTGGTATACTTGTCCTTGATAAGTGCTATTTTCTTTTCTCATTATCAGATACTTGTACAATTAAACTAGTAAAAGTGGGTAACCTTTTTACAGTAC AAATGCTGATTTACTTCATTAGTGATACACACCCTTCATTCCAATCTCACTGTTTATGTCGTGTGCAAAAATGTGCTGATCCTTAAGCACATGCAAGAAC AGTGGTCATGGGTATTTAGACAGCTATAAATTTCATGAGTTT
• Tissue: pods
• Gene name: LI_gene_179436;
• Additional information: details;

Expression of Ll_transcript_377729

FPKM

• PAB: 0
• PNAB: 2.4
• PS1: 4
• PS2: 0.6
• PS3: 2.5
• PW1: 1.5
• PW2: 3.5
• PW3: 2.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_377729

• Blastp: Geranylgeranyl transferase type-2 subunit alpha 1 from Arabidopsis with 49.36% of identity
• Blastx: Geranylgeranyl transferase type-2 subunit alpha 1 from Arabidopsis with 53.34% of identity
• Eggnog: (alpha) subunit(COG5536)
• Kegg: Link to kegg annotations (AT4G24490)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431368.1)
• Pfam: Protein prenyltransferase alpha subunit repeat (PF01239.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;