| Id Trinity | TRINITY_DN50729_c3_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_378258 |
| Sequence | TCAAGTACTTCATCTTTTCTTTTCAATAGGTAAATCCAAACCATCCTAGTGCAATCATCTATGAAGGTTAGGAAATACCTATTTCCACCAATTGACTCTA CCTCAAAAGGGCCACATACATCACTGAATACAAGTTCAAGAGGCTTCTTTGACTTAGTTGGAAGATTAGAATCAAAGGAGTTCCTTGATAACTTGCTTGA CAAGCAATCATCACACAGTGTTGTAGGTGCTTTTATACATGGCAATCCTGCAACATACTCATTCTTGCTTAGTAATTCTAAGCTTTTAAAGTTCAAATGC CCATACCTCAAGTGCCAAAGCCAAGTCTCTTGGTCTGTTTCAGCTTTGAGGCATGTCTGCTCACCAACTTGGATCTTAATCTTGAAGGTTCTGTTTGCTG ATTGAGTTGCCTTCAAGATTTTTTGATCTGTCTTGTCAAGCAAGGTCAGCTCACCATCTTGCATTATCACCTTATATCCTTTCTCTACAAGTTGTCCAAG ACTCAACAAGTTAGTTTTCATCTTAGGCACATAGAGAACATTAGCTATTGATGATTGCTTTCCATCAAGTCTTTGAATCACAATCCTTCCTACTCCTTCT GCTGTGACTCCACTGTGATCAGCAAATTTGACTTTGCTTTTCATAGACTCATCAATTTGTGCAAACCACTCCCTTCTTCCTGTCATGTGATTTGAACAAC CAGTGTCCAAATACCAGAAATCATCATTGCTTTTGCCCTTTTCATGATCAATCTCAGTTGTGGCCATCAACAAGCAATGATCATCATCAGAACTAGTTGA GTTTTCAGCCTTTGCAAGCCTGGCCTCATCTTCTCTATTCTTCTGCCACTTATTGAATTTGCATTCAGAGGCATAGTGGCCATAATTCCTACAATTGTAG CATTGTAGTTTCTTCTTATCTATCTTCTTTTTGGCTTCTGAGTTTCTGTGAGAATTTTTGCTTGGATCAAGATCACCACCACTCCTAGTTGCTTTGTGAT CTGAACCTTTTGATGAGACTTCTGATTCATTTGTCTTCCACCTATTGCCCTGCTTTCTCTCTTTATTTTTCCATTGGCTATTATTCTTCCTGGTGTGCCT AGCTATTAAAGATTGATCACTACCTCTGCCAGAACTTCTTCCTTTTAACCTCAGCTCATGAGCCTGCAATGATGCCTGCAATTCTTCAATCTTCACCTCT TCCAAGTTCTTGGATTCCTCAATTGCACATACTATGTGATCATATTTGCAAGTGAGGGTCCTCAACACCTTCTCCACTATTGACTTCTCCTTCATTGCTT TGCCACAAGCCTTCATCTGGTTTGAGAGAGTAAGGAACTTGGTCATATAGTCTGCCACTGAGTCAGTTTCTTCCATCTGCAGAACCTCATATTGCCTTCG AAGGTTCTGCAATTTTACCTTCTTGATCTTGTCAGCACCCTCATAGCTTTTCTCCAAGGTATCCCAAGCTTGTTTTGCAGTTTCAGCACCATTTATCTTC TCATAGTTTGCTGCATCCACACCTTGGTAGATGAGGAATAGAGCTTTGCAATCCTTCTTCTTGGCTTCATTATACATTGCTCTTTCCTCTTCAGTTGCTC CTTCCCCAATCTCTTGATATCCTTTCTGAACTATCTGAAGCACCTCTTGAAATCCAAACACAACCTTCATATGATTCCTCCATCTATCATAGTTTTTACT GTCTAAGATAGGGAGTGTCATAGTGAAGCCATTGCTGCTTGCCATCTCTTCTTCTTCAGCTAGCTTTCTTGAATTCGAATGCACTTCTCCTTCCTCCACA CTCACACACACAGGTCCCTTTGCACAAAGCTCTTGATACCACTGTTGAATTTGTCTCAAGAATCACTACACAAGTGATTGCTGGATCACCAAGCAAGAAG AAGTTCTTGCTGTGCTTGCTGTGCAGCCTGCTGCAATGCACACTAAGTGCAGTATATGGCTTAGACAGAAGCAATTGAGGGAAGAAAGAATGAAGGGAAG AAAGGATGAATGAGAGATAGAGAATTTGTGTTTCTTGGATAGCAAGAAATCAAAGAACAATGAATGAATACTTCTTACTTGTATTATTGAAAACACATTA GCAATATACAAGTTACTTACTTCACAAGTAATGGCAATGTTACTATTTATAACAATCCTAACTAACTAATTCTCAACTAACTAGTCTAATTAGGAAACTA TTACAAATCACACACAACAAAGCTTGAATTATCATCAACACTCTTCCTTAATTCAGCTTTGATCTTGCTTCACCACACCAATCATCTTCCTTAGCACTTC AAACCTACTTCTCTTCAATGGCTTGGTGAAACCATCTGCCAACTGGTTCACTGTGTTGCAGAAATCCACCTTCACCTTCCCCTTGCTAACTCGATCTCTA ATGTAGTGAAACCTTGTCTCTATATGCTTACTTCTTCCATGAGCCACTGGATTTAAAGCAAGATTAATGGCAGACTTGTTGTCCATCATAATCAGCATGC TCTCATCAGCATCCATTCTCAACTCCTCCATCAATCCTTTCAGCCATACTGCTTGACAGGCACACATACTTGCAGCAATGTATTCAGACTCACATGAAGA TAATGCCACCACCCCTTGTTTCTTTGAGCACCAACTTATTGGAGCATTGTTCAGCATGAATATATAGCCACTTGTACTCTTCCTATCTTCTTTGTCTCCA CACCAATCTGCATCTGAGTATCCAACAATCTCAGGTCTGCAGCCTCTATTTGCAGCAGTATTAGCAGAGTACATTAAGCCATAGCCAATTGTCCCTTTTA AGTACCTTAGTAATCTCTTTACTGCACTTAGGTGACTTGCCTTAGGAGCTTCCATAAATCTGCTCACAATTCCTACTCCAAATGCTAGATCAGGTCTTGA GTTGCATAGATATCTCAAAGAGCCAATCATTTGCCTATATTCAGTTCTGTCCACTGCACCATCTTCTTCATCTGCACTTGAACCAATCACAGCCTCTATA GGTGTTGCCACTGAGTTGCAATGCAGCATGTTAAACCTCTGCAGCACATCAGTGGCATACTTGGTTTGATGCATGAATATGCCTTGAGTAGTTCTCCTAA ATTCAATGCCAAGAAAGTAGGAGAGTTCCCCTAAGTCAGTCATGTCAAACTCAGATTGCATTTCAAGCTTGAATGATTGAATGATCATTGATTATTTGCC TGTGATAAGAAGATCATCCACATAGAGGCAAATTATCAATAATTCATCAGTGTGCTGCCCTTTCACATATACACCATGTTCTGTGATGCACTTTGTGAAT CCAAGCTGCTGTAGGACACCATCAATCTTTATATTCCATGCTCTTGGTGCTTGCTTGAGTCCATAAAGTGCCTTATGGAGCTTATAGACCAACCCTTCTC TTCCTCTGACCTCAAACCCTGGTGGTTGTGTGACAAACACTTCCTTGTCTATAGGTCCATTGAGGAAAGCTGATTTCACATCCATTTGATGCACTTCCCA TCCATTAAAGCTTGCTATACCAATCACTAATCTGATTGTTTCCAACCTGGCCACAGGTGCAAACACCTCATCATAATCTGTGCCTTGTTTCTGAAGAAAG CCTTTTGCTACCAGCCTTGCCTTGTATTTTGATACTTCACCATTTGGACTGATTTTGGTCTTGAAAACCCATTTCACAGCAATTGGCTTCTTTTCTCTTG GAAGTTTTGTTAATGTCCATGTGTTGTTTCTTTCTATGGACCTTAACTCTTCTTCCATGGCTGTGATCCAGTGTGTATGCTTGAGTGCTTCTTCTAGGCT CACTCGTTCCATTTCTGCCATCAGTGCCATATGCACAAGTTCACCTTCTTGAGTGATCACTGAATCTGAGAACACTTCATAATCTCTGAGTCTAGATGAT GGTTGTCTCACCCTTTGATTAGTTCTCCTAGAGCAAGATGGTTGGTTCTCTACTGTCTCAGCATTGGTGTTATGAGCTATTGAATTACTTTCCTCAGATT GCAGCCTGCCTTCATTCAATTGTAACACTGTTTTGATTCCATCCATGTTGTCTTCTGTTTGCCAATTCCAACTTTGCTTCTCATCAATTCTGAGATTTCT GCATATCATGAACTTGTTGGATATAGGATTGTACACTCTGTAAGCACCTGTGGTATGATAGCCCAAGAGAATGAGTTTTTCTCCCCTATCATCAAGCTTG CTTCTCTTCATCTCAGGCACAAGACCATAGCATATTGAGCCAAAAATCCTCAAGTGTTTTATACTAGGTCTACTGCCTGACCATGCTTCCTCAGGTGTTC TGAATTCCAACCTCTTGGATGGACATCTATTAATGATGTATGCAGCAGTAGCAATTGCTTCACCCCAAAACTTCTTTGGTAGAGATTTTGTCCTCAACAT GCACCTAGCCATGCTTAGAAGTGTCCTGTTTTTTCTTTCTGCAACACCATTGTGTTGTGGTGTATAGGGAGCTGTGATCTCATGATGAATCCCTTCCTTG CTGCAAAAATCATCAAACTCAGCTGAGACATACTCACCACCTCCATCTGATCTGAGTTGTTTCAATTTTGATTCACTCTTCTTTTCAACTTGTGCCTTGA ACCTTTTGAAACA BLAST |
| Tissue | pods |
| Gene name | LI_gene_179447; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_378258
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 27.5% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 38.93% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019465092.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14223.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |