Ll_transcript_378261

• Id Trinity: TRINITY_DN50729_c3_g1_i5
• Name Transcript: Ll_transcript_378261
• Sequence: TCAAGTACTTCATCTTTTCTTTTCAATAGGTAAATCCAAACCATCCTAGTGCAATCATCTATGAAGGTTAGGAAATACCTATTTCCACCAATTGACTCTA CCTCAAAAGGGCCACATACATCACTGAATACAAGTTCAAGAGGCTTCTTTGACTTAGTTGGAAGATTAGAATCAAAGGAGTTCCTTGATAACTTGCTTGA CAAGCAATCATCACACAGTGTTGTAGGTGCTTTTATACATGGCAATCCTGCAACATACTCATTCTTGCTTAGTAATTCTAAGCTTTTAAAGTTCAAATGC CCATACCTCAAGTGCCAAAGCCAAGTCTCTTGGTCTGTTTCAGCTTTGAGGCATGTCTGCTCACCAACTTGGATCTTAATCTTGAAGGTTCTGTTTGCTG ATTGAGTTGCCTTCAAGATTTTTTGATCTGTCTTGTCAAGCAAGGTCAGCTCACCATCTTGCATTATCACCTTATATCCTTTCTCTACAAGTTGTCCAAG ACTCAACAAGTTAGTTTTCATCTTAGGCACATAGAGAACATTAGCTATTGATGATTGCTTTCCATCAAGTCTTTGAATCACAATCCTTCCTACTCCTTCT GCTGTGACTCCACTGTGATCAGCAAATTTGACTTTGCTTTTCATAGACTCATCAATTTGTGCAAACCACTCCCTTCTTCCTGTCATGTGATTTGAACATC CAGTATCCAAGTATCAGAAGTCATTATTGTTCTTTTCTTTTCCATGATCATTCTCTGTTGTGGCCATCAATAAGCAGTGATCTTCATCTGAGCTAGTTGA GCTTTCACCTTTTGCAAGTCTGGCCTCATCTTCTCTATTCTTTTGCCACTTCTTGAATTTACATTCAGAGGCAAAGTGACCATAATTCCTACAATTGTAG CATTGTAGTTTCTTCTTATCTATCTTCTTTTTGGCTTCTGAGTTTCTGTGAGAATTTTTGCTTGGATCAAGATCACCACCACTCCTAGTTGCTTTGTGAT CTGAACCTTTTGATGAGACTTCTGATTCATTTGTCTTCCACCTATTGCCCTGCTTTCTCTCTTTATTTTTCCATTGGCTATTATTCTTCCTGGTGTGCCT AGCTATTAAAGATTGATCACTACCTCTGCCAGAACTTCTTCCTTTTAACCTCAGCTCATGAGCCTGCAATGATGCCTGCAATTCTTCAATCTTCACCTCT TCCAAGTTCTTGGATTCCTCAATTGCACATACTATGTGATCATATTTGCAAGTGAGGGTCCTCAACACCTTCTCCACTATTGACTTCTCCTTCATTGCTT TGCCACAAGCCTTCATCTGGTTTGAGAGAGTAAGGAACTTGGTCATATAGTCTGCCACTGAGTCAGTTTCTTCCATCTGCAGAACCTCATATTGCCTTCG AAGGTTCTGCAATTTTACCTTCTTGATCTTGTCAGCACCCTCATAGCTTTTCTCCAAGGTATCCCAAGCTTGTTTTGCAGTTTCAGCACCATTTATCTTC TCATAGTTTGCTGCATCCACACCTTGGTAGATGAGGAATAGAGCCTTACAATCTCTTTTCTTTGCTTCATTGTACACTGCTCTTTCTTCTTCTGTTGCAT CATGCTGGATTTCTTGATAGCCTTTCTGCACTATCTCAAGCACTTCTTGAAATCCAAACACAACCTTCATATGATTCCTCCATCTATCATAGTTTTTACT GTCTAAGATAGGGAGTGTCATAGTGAAGCCATTGCTGCTTGCCATCTCTTCTTCTTCAGCTAGCTTTCTTGAATTCGAATGCACTTCTCCTTCCTCCACA CTCACACACACAGGTCCCTTTGCACAAAGCTCTTGATACCACTGTTGAATTTGTCTCAAGAATCACTACACAAGTGATTGCTGGATCACCAAGCAAGAAG AAGTTCTTGCTGTGCTTGCTGTGCAGCCTGCTGCAATGCACACTAAGTGCAGTATATGGCTTAGACAGAAGCAATTGAGGGAAGAAAGAATGAAGGGAAG AAAGGATGAATGAGAGATAGAGAATTTGTGTTTCTTGGATAGCAAGAAATCAAAGAACAATGAATGAATACTTCTTACTTGTATTATTGAAAACACATTA GCAATATACAAGTTACTTACTTCACAAGTAATGGCAATGTTACTATTTATAACAATCCTAACTAACTAATTCTCAACTAACTAGTCTAATTAGGAAACTA TTACAAATCACACACAACAAAGCTTGAATTATCATCAACACTCTTCCTTAATTCAGCTTTGATCTTGCTTCACCACACCAATCATCTTCCTTAGCACTTC AAACCTACTTCTCTTCAATGGCTTGGTGAAACCATCTGCCAACTGGTTCACTGTGTTGCAGAAATCCACCTTCACCTTCCCCTTGCTAACTCGATCTCTA ATGTAGTGAAACCTTGTCTCTATATGCTTACTTCTTCCATGAGCCACTGGATTTAAAGCAAGATTAATGGCAGACTTGTTGTCCATCATAATCAGCATGC TCTCATCAGCATCCATTCTCAACTCCTCCATCAATCCTTTCAGCCATACTGCTTGACAGGCACACATACTTGCAGCAATGTATTCAGACTCACATGAAGA TAATGCCACCACCCCTTGTTTCTTTGAGCACCAACTTATTGGAGCATTGTTCAGCATGAATATATAGCCACTTGTACTCTTCCTATCTTCTTTGTCTCCA CACCAATCTGCATCTGAGTATCCAACAATCTCAGGTCTGCAGCCTCTATTTGCAGCAGTATTAGCAGAGTACATTAAGCCATAGCCAATTGTCCCTTTTA AGTACCTTAGTAATCTCTTTACTGCACTTAGGTGACTTGCCTTAGGAGCTTCCATAAATCTGCTCACAATTCCTACTCCAAATGCTAGATCAGGTCTTGA GTTGCATAGATATCTCAAAGAGCCAATCATTTGTCTATACTCAGTTTTGTCCACTACATCATCTATTTCTCCTAAGCTTGAACCAAGTCCACCTTCAATA GGTGTTGCTACTGAGTTGCAGTGCACCATATTGAACCTTTGCAACACATCAGTGACATATTTGGTTTGATGCATGAAGATGC
• Tissue: pods
• Gene name: LI_gene_179447;
• Additional information: details;

Expression of Ll_transcript_378261

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.1
• PS2: 0.1
• PS3: 0.2
• PW1: 0.1
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_378261

• Blastp: -
• Blastx: Copia protein from Sophophora with 39.93% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019435814.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;