Ll_transcript_378262

• Id Trinity: TRINITY_DN50729_c3_g1_i6
• Name Transcript: Ll_transcript_378262
• Sequence: TCAAGTACTTCATCTTTTCTTTTCAATAGGTAAATCCAAACCATCCTAGTGCAATCATCTATGAAGGTTAGGAAATACCTATTTCCACCAATTGACTCTA CCTCAAAAGGGCCACATACATCACTGAATACAAGTTCAAGAGGCTTCTTTGACTTAGTTGGAAGATTAGAATCAAAGGAGTTCCTTGATAACTTGCTTGA CAAGCAATCATCACACAGTGTTGTAGGTGCTTTTATACATGGCAATCCTGCAACATACTCATTCTTGCTTAGTAATTCTAAGCTTTTAAAGTTCAAATGC CCATACCTCAAGTGCCAAAGCCAAGTCTCTTGGTCTGTTTCAGCTTTGAGGCATGTCTGCTCACCAACTTGGATCTTAATCTTGAAGGTTCTGTTTGCTG ATTGAGTTGCCTTCAAGATTTTTTGATCTGTCTTGTCAAGCAAGGTCAGCTCACCATCTTGCATTATCACCTTATATCCTTTCTCTACAAGTTGTCCAAG ACTCAACAAGTTAGTTTTCATCTTAGGCACATAGAGAACATTAGCTATTGATGATTGCTTTCCATCAAGTCTTTGAATCACAATCCTTCCTACTCCTTCT GCTGTGACTCCACTGTGATCAGCAAATTTGACTTTGCTTTTCATAGACTCATCAATTTGTGCAAACCACTCCCTTCTTCCTGTCATGTGATTTGAACAAC CAGTGTCCAAATACCAGAAATCATCATTGCTTTTGCCCTTTTCATGATCAATCTCAGTTGTGGCCATCAACAAGCAATGATCATCATCAGAACTAGTTGA GTTTTCAGCCTTTGCAAGCCTGGCCTCATCTTCTCTATTCTTCTGCCACTTATTGAATTTGCATTCAGAGGCATAGTGGCCATAATTCCTACAATTGTAG CATTGTAGTTTCTTCTTGTCCACTTTCTTTCTAGTTTCTGAGTTTCTGTTTGAGTTCTTGCTTGAATCAAGATCAGCACCATTCCTCATTGAGTTGTGAT CTGATCCTTTTGATGAGCCTTCTGTTTCAGTTGTCTTCCATCTACTGCCTGACTTTCTTTCTTTGTTCCTCCACTGGCCATTCATTTTCTTGGTGTGCCT AGCCATTAGAGCTTGATCACCACCTCTGCCAGAACCTCTTCCTCTCAGTCTCAACTCATGAGCCTGCAGTGATGCCTGCAACTCCTCAATTTTCACTTCC TCCAGGTTTTTGGATTCCTCAATTGCACAAACTATGTGATCATATTTGCAAGTGAGGGTCCTTAAAATCTTTTCTACTATTGACTTCTCTTTCATTGTTT TGCCACAAGCCTTCATTTGATTTGAAAGAGTCAACACCTTGGTCATGTAATCTGCCACTGAGTCAGATTCCTCCATCTGCAGAACCTCATATTGTCTTCT AAGGTTCTGCAGTTTCACCTTCTTGATTTTATCAGCTCCCTCATAGCTTTTCTCCAAGGTATCCCAAGCTTGTTTTGCAGTTTCAGCACCATTTATCTTC TCATAGTTTGCTGCATCCACACCTTGGTAGATGAGGAATAGAGCCTTACAATCTCTTTTCTTTGCTTCATTGTACACTGCTCTTTCTTCTTCTGTTGCAT CATGCTGGATTTCTTGATAGCCTTTCTGCACTATCTCAAGCACTTCTTGAAATCCAAACACAACCTTCATATGATTCCTCCATCTATCATAGTTTTTACT GTCTAAGATAGGGAGTGTCATAGTGAAGCCATTGCTGCTTGCCATCTCTTCTTCTTCAGCTAGCTTTCTTGAATTCGAATGCACTTCTCCTTCCTCCACA CTCACACACACAGGTCCCTTTGCACAAAGCTCTTGATACCACTGTTGAATTTGTCTCAAGAATCACTACACAAGTGATTGCTGGATCACCAAGCAAGAAG AAGTTCTTGCTGTGCTTGCTGTGCAGCCTGCTGCAATGCACACTAAGTGCAGTATATGGCTTAGACAGAAGCAATTGAGGGAAGAAAGAATGAAGGGAAG AAAGGATGAATGAGAGATAGAGAATTTGTGTTTCTTGGATAGCAAGAAATCAAAGAACAATGAATGAATACTTCTTACTTGTATTATTGAAAACACATTA GCAATATACAAGTTACTTACTTCACAAGTAATGGCAATGTTACTATTTATAACAATCCTAACTAACTAATTCTCAACTAACTAGTCTAATTAGGAAACTA TTACAAATCACACACAACAAAGCTTGAATTATCATCAACATCATTTGCATATAGAAACCTTACATGTATTTACATTTATATAAGTGGTAATTATATTTAA ACTTTTCCATTTTGTTAATGTTGGGTATTCATCAATTGCATGCATGTTTTTGCAGGTAAGTTGAAGGATAGTGTTTCATACTATATTTCATCTTTTGTTG TATGGAAGTGTTATGCTGAGTGAGAAAGTTGAGGATGGCTTGTTTCTTATTCCATCCAAAAACAGAATCACAATATGAACCTTAGTCGTGTAAATAATGG CTTATTCACCATTTGTAATCTAAAAGCCCTATGGTATATGTATATTCAGTTACTCATATGTTATGTAGCTGAAGCTTTCAAGTTTTTATTTTAATATGAG AAACCCTCTTTTAATGGTTTCTCATCTATCTACTTTGTATTTCAAATGTTATGACTAATGAATATGCATGTGTAATTGGCCTACTTTTATGTGGCTGAAA TTGCAATCATGTACTTTTTGAGTGAAATTCTCTCTATTGGTTTCTCTGAATTTATAAATATGTGGTTGAGT
• Tissue: pods
• Gene name: LI_gene_179447;
• Additional information: details;

Expression of Ll_transcript_378262

FPKM

• PAB: 0.5
• PNAB: 0
• PS1: 0
• PS2: 0
• PS3: 0.1
• PW1: 0
• PW2: 0
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_378262

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 28.09% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 27.76% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442233.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;