Ll_transcript_377479

• Id Trinity: TRINITY_DN50748_c0_g1_i5
• Name Transcript: Ll_transcript_377479
• Sequence: CTTAGAATGAAATCTGAATCCATAGAAATTGTGACATACCCGATTGAGACCCGTCTCAAACCCACTCCAAAGTCCAACGACAAAGGAAAACCCAAAATCA CACACTACACTCCTTCGTTTTTTTCTTCTTATCTTCTCTACTCGAGGAACTAGGGTTTATCGAGGGTTTCGATCTCTCTCTCTTTCTCTGTGCCCTAACA ATGGTGAAACCTGGGCGAGTTCGTCGTTCACCACCATCTGGTTCCGTTTCTGCTTCATCCTCTCGTTCCCGATCTCGATCTTCTTCTCCTTCCTCCCGCT CTCGATCTTCTTCTCGCTCTCGTTCCAGATCCTTCTCTTCCTCATCTCCCTCTCGCAGTTCCCGAAGCCCTAGCCGAAGCCCTCCGCCTCAGAGAAAAAA GAGTCCTTCCGAAGCAGCTAGGCGAGGTCGATCTCCTCCGCCTCCGATCAAAAGAACTTCTCCTCCACCAAGGAAGGCGTCTCCTTTACGTGAATCACTT GTTCTTCATGTAGAAAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATTTTTGGTAACTTCGGTGAGGTTCTAAGTGTGGAGTTGGCTATGG ATCGAGCTGTTAATCTTCCTAAAGGATATGGATATGTGCATTTCAAGACAAGAGAGGATGCCGAAAAAGCATTATTGTACATGGATGGTGCCCAAATAGA TGGCAACATTGTTAAGGCCAGATTTACTCTACCACCACGACAGAAAGTTTCACCACCCCCAAAGCCTTCTGCTGTTGCTCCAAAGAGAGATGCTCCTAGG AGTGATAATGCTGGTGCAGATGCTGAAAAAGATGGGCCAAAGCGGCAAAGAGAACCATCTCCACGGAGAAGACCTCTCTCACCGAGAAGGAGATCTCCTG TCCCTCGTAGAGCTGGATCTCCAAGAAGACCAGATTCTCCTCGCCGTCGTGCAGATTCTCCCGTTCGTCGTCGATTAGACTCTCCCCCCTATCGTCGTGG AGACACACCTCCTAGGAGGAGGCCCATTTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGGCGCCCTAGATCTCCTGGCAGAGTCTCACCTAGAAGG ATGCGTGGGAGCCCCATTCGTAGACGTTCTCCTCCTCCATTAAGGCGCCGTTCACCACCTAGAAGAGCCCGTAGTCCTCCTAGAAGATCTCCAATTGGTC GAAGACGTAGTCGCTCTCCAGTACGCAGGTCTGCACGCTCACGTTCTAGATCATTCTCACCTCGAAGGTAATTTTATTGAATGTCTATGTTTCAGTTCAC ACTAAAATGAGCCAGCATTATTTTTTTCCCTATTTATAATCTATTTTTTGCCAACTCATTTGTTTTAACGCATTAGAATATTTTGAAGTGTGGAATGTTG ATGAGCATCCGAAATTATGATTTTTGGTCTTGGAGCGGATGGACTTTGTAGTTATCAAAATGTTCTCAAGTACTGACCCAGTGAAAGCTAATCTGATGCT TCATTTTTTGAAAACAAGAAACTAGTCAGTGGTGTAGAGTTCCATGTATTAACTAAAATCATTGGTGGTTGTATGAAAACCTGTTGTGTAGGAAGACATG CTTATTTCACAGTGTACTCTGATTCCTCACACCAACCTTAGTATGTATATGCATTGGAAAATATATGGGAAATTTTAACTCTATTATTTCTGGATCTCTA GTTATGTTATGGACAAATTAATCCATTAAGATAAATGTGCAACATTGAAAATATGTAAAAGTTTGAATAAAATTTTCCTCTTGGCAGGGGTCGACCACCG ATGAGACGTGGGAGGTCATCATCCTACTCTGACTCACCTAGTCCACGCAAGGTATCTCGGAAAACAAAGAGCCGCAGTCCAAGGTTATTTATTCCATATA ATTGTTTCTCATTTGATTCCTCTTCTTGTTTGGTAACAGTCAGTTTTATTTTCCTGGCAGATTCCTGTTGTAACATGTTTAAAATTATCGGTGTTTTTTC CTTCTATTTTTCTTCATTACTGATGTGTTTTCCCCCCTTCCTTTTCGACCTATGTAATCACTTCTGGTCTAAAACAAAAGTAAAATAGACTCCACTTCTC TTGTTTTGTGAAGTGAAGGATTTGTTCTCGTTATATGATAGGGAATTAAAACATCACTAGCTCCATGAAAAACGACCATTCATATGGGAATATAATTAAC TAATATATGGTTTTGGAGCCTGTCAGAAATGACTATTTCTGTAAAATTTACCGCTGAGCTTCAGTCTTTCGCACAGAGCACAAGAGTAAAATTTTAGTTT GATGAATGATTGATCTAAAGGAGAATAGACTCTTTGCTCAATTCTGATGTGTTTTTCTGCAATAAGATTTTAGTCGACAGCTTTTCTTCTGGGTTTCATA TTTCCATTTTAGAATATGTGAATTAGTAGGGCAACTCAATACATGAATCTCCAACTCAATGGGGTTTGGGGAGGGTAGATGTACGCAGTATTGCTTCCAC AAGTGGACATACTGTTTCCATGACCTGAACTACGAGTTAAGCAACCTTACCATTTCGTGGAGGTTCATTCCAGATTATTTGAATTAGGGTTGAACTATTA TTTCATGGTGCACATATCTTGTTAAAACTGACATTTGTTAGATTCCCATTGCCACTAAATGGTTTTTTTTATCGGCAATGCCTGATTTAGTTTTACCATT CCTTTGGTTTGACTTCAATAATAATGTATAGGTAATTCTTATTTTATTTAATTGTATTTTCATCTGGTTCTTTGGTATGCTGAATTTTAGTTGTAATTTT AGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGCTCACCACTCCCACCACCTCCACCTCCACCACCTCGCAAGCCGTAGATAGTTTCTG TACCTCTAGTGTCTCATTTTGTTGATGTTTCTGTGAAAAATCTATATCGGTTTATGAGAAGTTATTCTTGCTGCAATGAATGTGCTAGGGGATATATGTT ACTTTATCTTGTTGTCTGGATTCTCAAATACAGTTTATCTTGTAGCACTTTAAAAGAGTTGCTACAAACTTTCTGTTCCATTAATTTGGATTTGTGACCG ACTTTAGCTTTGTTATTCTGCTGACATGCAAAATTTGAGAGATATGATGTTTTGATTTCTTGCATCAGGATTAGACTGAATTGAAAAATTGGTTGACACT CTTCACAAATTAATGGAATTGAATTTTCTAAGGATTTAATATGTGTATGATGTAACTGTTTT
• Tissue: pods
• Gene name: LI_gene_179604;
• Additional information: details;

Expression of Ll_transcript_377479

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.6
• PS2: 0.4
• PS3: 0.6
• PW1: 0
• PW2: 0.7
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_377479

• Blastp: Serine/arginine-rich splicing factor SR45 from Arabidopsis with 68.37% of identity
• Blastx: Serine/arginine-rich splicing factor SR45 from Arabidopsis with 80.34% of identity
• Eggnog: Rna-binding protein(COG0724)
• Kegg: Link to kegg annotations (AT1G16610)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425514.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;