Ll_transcript_377780

• Id Trinity: TRINITY_DN50751_c2_g2_i11
• Name Transcript: Ll_transcript_377780
• Sequence: CTGCAACATTCCCTTTCTATAAACAGTCTTTCTACTCTACGCCGTGGGCTCAAAGAACAAACACCCTTTTTATAAACTTCCACAAACTTAGGATTCACAA GTATCAGCGCACGTTAGAACAACCCAATGACAACATCATCAACCGGGTCGGGTTGTATATTATGGTTTCGAAAGGGTCTTCGGATCCATCACAACCCGGC TCTTCAATTCGCTTCCCAAAATGGGGTTTCTAATCTTTACCCACTTTTTGTTATCGACCCCAATTACATCAAACCCGACCCGAATTCATTCTCTCCCGGG TCGACCCGGTCGGGTCTTAACCGAATCAAGTTCTTACTTCAGAGCCTTGTGGACCTTGATTTCAATCTTAACAAACTTGGCTCGCGTCTTCTTATTCTTA AGGGTGATCCTGTAAAGGTTCTTATTCGTTGCTTCAAAGAGTGGAATATCAGAAAGCTATGCTTTGAGTTTGACACTGAACCATATTATCAGGCTCTGGA TATTGAAGTTAAGAACTTTGCACTGGCAGAGGGAATTGAGGTTTTCTCCCCTGTAAGTCACACACTCTTCAACCCCAAGGATATTATAGAGAAGAATGGA GGAAAGCCGCCCCTTAGTTATCAATCATTTATCAAGCTTGCCGGGGAGCCGCTACCCCCTCTCCCAACCAAGCACTCTTCACTTCCTCCAGTTGGCCATC TTGGAACTTGTGATGTTTTTGAAGTTCCATCGATCAAAGATCTTGGATATGAAGACGCTAAACAGGTGCTCTTATCATATTCTAGATTATAACTCTTCAT GGGCACCTAATGAGAGAAGCTATATTCAGGATGAGTTCTCTCCTTTCAAAGGCGGTGAATCAGAAGCGTTGAAGAGGTTGGCAGAGTGTATGAAAGACAA GGTGTGGGTGGCAAACTTTGAGAAACCCAATGGTAATCCATCTGCATTTCTTAAGCCAGCAACAACTGTTTTATCACCTTACTTGAAATTTGGTTGTCTC TCTTCCAGTTATTTCTACCAGCAAATTCAGGATGTATATAAAACTATGCCTAAGCATACATCACCACCTGTTTCTCTTCTAGGACAGTTGTTGTGGCGAG ACTTCTTTTACACGGCAGCTTTTGGGACTCCGAACTTCGATAGAATGAAAGGCAATAGGATATGCAAGCAAATTCCGTGGAAGGATGATGATAAATTGCT GGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGGTCCAGGTTTGGGTTCTAAAATCGTTTTTTCCTCCAAATGAAGCAATA ACCAATAGTTGTATTACTTTGAAGCTGCATAGGTGCTCAAATCTAGTCCACCACAATATTTTCATTAGCCTTCTCAGGAAGTGCATTTGAATCTGTAATT TTCGGTTGTAGCTACGCAAGTGGGGTTGGATACATCATCTGGCACGGCACTCTGTTGCGTGCTTTCTAACTCGAGGTGATCTGGTATATGTCTTCGATAC TTTAAGCATGTCAAACTTTTTATATGCTGCCACTCTTTACCAACGTTGTTTGCTTATGCTCACAGTTTGTTCATTGGGAAAAAGGACGTGATGTTTTTGA GCGACTTCTGATTGATTCAGATTGGGCCATTAACAATGGAAACTGGTTGTGGCTCTCATGTTCATCCTTCTTTTATCAGTACCATCGTATTTATTCCCCA ATTACATTTGGCAAGAAGTATGACCCTAATGGTGACTACATTAGGCATTTTCTCCCGGTCTTAAAAGATATGCCCAAGGAGTACATTTATGAACCATGGA CTGCTCCTCTAAGCATCCAGACCAAAGCAAAATGCATAATTGGCAAAGACTATCCGATGCCAGTTGTTTCCCATGATTCTGCAAGTAAAGAATGCCGACG GAAAATGCGCGAAGCATACGCGATGAACAAAGAATTGAAGGGTTTGGTTAGTGAGGATGATCTGAAGAAGTTAAGAAGAAAATTAGATGAAAGTGTAGAG CAAGGGGGAAAAGCTAAAAGATCAAGACAATAAGTGATTGTGGGTGAGAGATAAATTTGCTGGTTTTTTTCCTCATACTACCATGCTTTATATTAGGCAT TACCTTTTGTATCACACTATCTATCATGTAGTATATATTTTTTATATATATATTACTTTCGGGGTATATCATTTTCGGGGTACATGGAACCATAAACTAC TAGACCAACACATTCCAGAACTCGATTATTTTATTAGAAGATAATTTAAAAAATATATATTACCATATGTGTATTGGACCGAATTGGCCTGCATGGATAT ATGAGATTTCAAATATGCCAAATTGTCTCAAGCAATTATTATTTGCATGTAGAAGCAATTAATTAATTAATTTGGTTAAAAAGTTATCTTTTTTTTTTAA ATTACAAATTCATAGGCTGTAACCCCATCATTAGTAGATTTAAAGAATGAAATAATCTTTAAGTTTTAGATCAGTAAAATGCTTTAAACCAAGGATTTTA TATGTGTGAACTGATAGTGTAAGTGTTTTTTATACTGTTAGCAAATCATTCACCATTGATTTGTTAACCATGATTGAACGTCTAACAAAAGTAATACAAA CCAAACGGTTATGAAAAACTTTACAATATTGTACAAATTTTAAATTCTTAAAACCAGTAACCATGAAGAATGATATTGTCTAGTGGTTTAGCACATTGGA TTTGATTTCACTAAAACCACACACATTAAATGACATGGTTCAAGAATAAAGAATGTATTGCAAAACAAAATAGAAATGTATTGAAAATAGTGGAAATGTT TCTTTTAACAAAATATATTTATTATTTTCTTGTCCAGCCCTAATTTTAAAGATTTGTATGAAAATAGTGAAAGTAAAAAATAAAGTGATTTTATAAGAAG AAAAGAAAATTGATATATTTATGAAATCTATTGTTGTGTTGTATCATTGAAAAACAACAAAGAACCCTATCACTCTATCTCATTTCTGAGTTTGAAAACG ACACCGTTCGCAACATCGTTGGGCGTGACCTGAGAACAATCATGTATCGTAGACTTCTCTCTTCTCACCTCAAAACCCTAACTTCTCTCTCTCCGGCCCG ATCTGCTTCCTCCGCCGCCATCGCCGCCGCCGCTCCTCCCGCACTCTCTTCCCTCTCCCGCCGCCACTTTTCCGATGACACGAGTGCGGTAAAAAAGAAG GTTGAAGATGTTGTGCCAATCGCTACTGGTCACGAGCGTGAGGAAATTCAAGCTCAACTTGAGGGAAGGGATATTCTTGAAATAGACCACCCTGAAGGTC CTTTTGGCACAAAGGAAGAACCTGCAGTTGTCAAATCTTACTATGATAAAAGAATAGTCGGGTGCCCAGGAGGTGAAGGCGGTGAGTTTTCCTGATCTAT CTTAATGTATCCTTGTATCCATGATTCTCCACAAGTTGATGAAAAATTCCAGAATTCTGGTTATAGCACTGACGAGGTGAACACCGGTTTGATTTCAGAG GATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAA
• Tissue: pods
• Gene name: LI_gene_179622;
• Additional information: details;

Expression of Ll_transcript_377780

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_377780

• Blastp: (6-4)DNA photolyase from Arabidopsis with 75.17% of identity
• Blastx: (6-4)DNA photolyase from Arabidopsis with 61.64% of identity
• Eggnog: deoxyribo-dipyrimidine photolyase(COG0415)
• Kegg: Link to kegg annotations (AT3G15620)
• CantataDB: Link to cantataDB annotations (CNT0001633)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019430002.1)
• Pfam: FAD binding domain of DNA photolyase (PF03441.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;