Id Trinity | TRINITY_DN50751_c2_g2_i7 |
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Name Transcript | Ll_transcript_377771 |
Sequence | CTGCAACATTCCCTTTCTATAAACAGTCTTTCTACTCTACGCCGTGGGCTCAAAGAACAAACACCCTTTTTATAAACTTCCACAAACTTAGGATTCACAA GTATCAGCGCACGTTAGAACAACCCAATGACAACATCATCAACCGGGTCGGGTTGTATATTATGGTTTCGAAAGGGTCTTCGGATCCATCACAACCCGGC TCTTCAATTCGCTTCCCAAAATGGGGTTTCTAATCTTTACCCACTTTTTGTTATCGACCCCAATTACATCAAACCCGACCCGAATTCATTCTCTCCCGGG TCGACCCGGTCGGGTCTTAACCGAATCAAGTTCTTACTTCAGAGCCTTGTGGACCTTGATTTCAATCTTAACAAACTTGGCTCGCGTCTTCTTATTCTTA AGGGTGATCCTGTAAAGGTTCTTATTCGTTGCTTCAAAGAGTGGAATATCAGAAAGCTATGCTTTGAGTTTGACACTGAACCATATTATCAGGCTCTGGA TATTGAAGTTAAGAACTTTGCACTGGCAGAGGGAATTGAGGTTTTCTCCCCTGTAAGTCACACACTCTTCAACCCCAAGGATATTATAGAGAAGAATGGA GGAAAGCCGCCCCTTAGTTATCAATCATTTATCAAGCTTGCCGGGGAGCCGCTACCCCCTCTCCCAACCAAGCACTCTTCACTTCCTCCAGTTGGCCATC TTGGAACTTGTGATGTTTTTGAAGTTCCATCGATCAAAGATCTTGGATATGAAGACGCTAAACAGGATGAGTTCTCTCCTTTCAAAGGCGGTGAATCAGA AGCGTTGAAGAGGTTGGCAGAGTGTATGAAAGACAAGGTGTGGGTGGCAAACTTTGAGAAACCCAATGGTAATCCATCTGCATTTCTTAAGCCAGCAACA ACTGTTTTATCACCTTACTTGAAATTTGGTTGTCTCTCTTCCAGTTATTTCTACCAGCAAATTCAGGATGTATATAAAACTATGCCTAAGCATACATCAC CACCTGTTTCTCTTCTAGGACAGTTGTTGTGGCGAGACTTCTTTTACACGGCAGCTTTTGGGACTCCGAACTTCGATAGAATGAAAGGCAATAGGATATG CAAGCAAATTCCGTGGAAGGATGATGATAAATTGCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGGTCCAGCTACGC AAGTGGGGTTGGATACATCATCTGGCACGGCACTCTGTTGCGTGCTTTCTAACTCGAGGTGATCTGTTTGTTCATTGGGAAAAAGGACGTGATGTTTTTG AGCGACTTCTGATTGATTCAGATTGGGCCATTAACAATGGAAACTGGTTGTGGCTCTCATGTTCATCCTTCTTTTATCAGTACCATCGTATTTATTCCCC AATTACATTTGGCAAGAAGTATGACCCTAATGGTGACTACATTAGGCATTTTCTCCCGGTCTTAAAAGATATGCCCAAGGAGTACATTTATGAACCATGG ACTGCTCCTCTAAGCATCCAGACCAAAGCAAAATGCATAATTGGCAAAGACTATCCGATGCCAGTTGTTTCCCATGATTCTGCAAGTAAAGAATGCCGAC GGAAAATGCGCGAAGCATACGCGATGAACAAAGAATTGAAGGGTTTGGTTAGTGAGGATGATCTGAAGAAGTTAAGAAGAAAATTAGATGAAAGTGTAGA GCAAGGGGGAAAAGCTAAAAGATCAAGACAATAAGTGATTGTGGGTGAGAGATAAATTTGCTGGTTTTTTTCCTCATACTACCATGCTTTATATTAGGCA TTACCTTTTGTATCACACTATCTATCATGTAGTATATATTTTTTATATATATATTACTTTCGGGGTATATCATTTTCGGGGTACATGGAACCATAAACTA CTAGACCAACACATTCCAGAACTCGATTATTTTATTAGAAGATAATTTAAAAAATATATATTACCATATGTGTATTGGACCGAATTGGCCTGCATGGATA TATGAGATTTCAAATATGCCAAATTGTCTCAAGCAATTATTATTTGCATGTAGAAGCAATTAATTAATTAATTTGGTTAAAAAGTTATCTTTTTTTTTTA AATTACAAATTCATAGGCTGTAACCCCATCATTAGTAGATTTAAAGAATGAAATAATCTTTAAGTTTTAGATCAGTAAAATGCTTTAAACCAAGGATTTT ATATGTGTGAACTGATAGTGTAAGTGTTTTTTATACTGTTAGCAAATCATTCACCATTGATTTGTTAACCATGATTGAACGTCTAACAAAAGTAATACAA ACCAAACGGTTATGAAAAACTTTACAATATTGTACAAATTTTAAATTCTTAAAACCAGTAACCATGAAGAATGATATTGTCTAGTGGTTTAGCACATTGG ATTTGATTTCACTAAAACCACACACATTAAATGACATGGTTCAAGAATAAAGAATGTATTGCAAAACAAAATAGAAATGTATTGAAAATAGTGGAAATGT TTCTTTTAACAAAATATATTTATTATTTTCTTGTCCAGCCCTAATTTTAAAGATTTGTATGAAAATAGTGAAAGTAAAAAATAAAGTGATTTTATAAGAA GAAAAGAAAATTGATATATTTATGAAATCTATTGTTGTGTTGTATCATTGAAAAACAACAAAGAACCCTATCACTCTATCTCATTTCTGAGTTTGAAAAC GACACCGTTCGCAACATCGTTGGGCGTGACCTGAGAACAATCATGTATCGTAGACTTCTCTCTTCTCACCTCAAAACCCTAACTTCTCTCTCTCCGGCCC GATCTGCTTCCTCCGCCGCCATCGCCGCCGCCGCTCCTCCCGCACTCTCTTCCCTCTCCCGCCGCCACTTTTCCGATGACACGAGTGCGGTAAAAAAGAA GGTTGAAGATGTTGTGCCAATCGCTACTGGTCACGAGCGTGAGGAAATTCAAGCTCAACTTGAGGGAAGGGATATTCTTGAAATAGACCACCCTGAAGGT CCTTTTGGCACAAAGGAAGAACCTGCAGTTGTCAAATCTTACTATGATAAAAGAATAGTCGGGTGCCCAGGAGGTGAAGGCGAGGATGAGCATGATGTTG TCTGGTTTTGGCTGGAGAAAGGCAAACCTCATGAATGTCCAGTGTGCTCACAGTATTTTGTGCTTGAAGTAGTGGGACCTGGTGGATCACCCTATGGACA TGGCGACGGCGACGAAGATCATCACCATTGATTGCATGCTTCAAATTTCCTTCCGGAATAAGTTCAGGAAAGATAGAAACATTGTTTAGCAAACATAAGT CCTTTCAAAGCCTGTGTTTGGTTTTGATTTATAATATTTTGTGTTGTTGCAACTTTGAAGGTACAGTTTCTGTGATTATTAGACACATGTTGCTCATTTG CTTGAGGTATCAGATTCTTGTATTATGTTTTGTGCACTGTGAAATAATTGATAACCACTTGATGATTCTTTGACATTAATATATCTGTTTAAATAGAACC TTAA BLAST |
Tissue | pods |
Gene name | LI_gene_179622; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_377771
Blastp | (6-4)DNA photolyase from Arabidopsis with 70.2% of identity |
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Blastx | (6-4)DNA photolyase from Arabidopsis with 70.32% of identity |
Eggnog | deoxyribo-dipyrimidine photolyase(COG0415) |
Kegg | Link to kegg annotations (AT3G15620) |
CantataDB | Link to cantataDB annotations (CNT0001633) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019430002.1) |
Pfam | DNA photolyase (PF00875.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |