Ll_transcript_379808

• Id Trinity: TRINITY_DN50753_c1_g2_i1
• Name Transcript: Ll_transcript_379808
• Sequence: AGCTAATCTGATAATGTATAAATAGTGCGTTGAGTTTGATAGGGGAACTTATAACTTTTAAACTTTATGATTTCACTCCACTCTATGGGCAGATATGTAA AGATAAAGATGAAGCTGAAATCTGGTTTGTTGCTCTCAAGGCATTAGTTACTCGAGGTAACAATCGCAAGTGGAGATTCGAAACAAGATGTGAAAGTGTG TACTCTGATAGTCCACATTCTGGCACAGGAAGATCCACTCCATCAGTTACACCATTTGTCTGTCGCAGTAGCTTTCATCTTCTGTTGTTTTTTGAAGTTC ATATTCTGTTGTCTATAGACATTTAAAAATTGCTATAATTTTCACTGTTTCTAATTTCAAACCACAGGACCCAGGAGACAGCGACAGGGTGGTGTTTGAC AATTCTTTGCAAAACAAATGGGTAAAGGCTTTCTCTGAAATAATTTCATATTCTGCAGCTAGCAAGAGTCCCTGCCAAACTGAATTAATTGCAACTTCCT CTTTCTCCTCTACGTCTGTGGATACCTCAAACTATCGAAATTCTGCGTCTGAGGCAATTCGTATTAGCCTATCCAGTGCTGTAAGTTCATCCAGCCAGGG TTCTTATCATGATGATTTTGATGGCTTAGGTGATATTTTTATCTGGGGAGAAGGTGTTGGTGATGGAATTCTTGGTGGTGGAGCCTCATCTAGTTTTGAG ATAGACGCATTCCTCCCCAAGGCCTTGGAATCAAAAGTAGTTCTGGATGTTCACAGTATTGGTTGTGGCTACAAACATGCTGTTATAGTTACCAAGCAGG GAGAAATATTTAGTTGGGGGAAGGAGTCAGGAGGCCGGCTTGGTCATGGTGTAGAAGTTGATGTTTCTCACCCTAAGCTCATTGACACGCTTAGTGGCAT GAATATTGAATTAGTAGCATGTGGAGAAAGTCATAGTTGTGCTGTTACATATTCTGGGGATCTTTTTACTTGGGGTGATGGTACTCACAATTCTGGCTTG CTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAAAAAGTAAGTGGTAACATGGAGGGTTTACGCATATCATATGTGTCGTGTGGACCTTGGCACA CAGCTGTTGTTACCTCAGCTGGGCAGTTGTTTACATTTGGGGATGGAACTTTTGGTGCCTTGGGTCATGGAGATACTAGTAGCACAAATATTCCTCGGGA AGTAGAGACTTTGAAGGGGTTGAGAACAACCAAGGTTTCCTGTGGTGTTTGGCACACTGCTGCGGTTGTTGAGATGATAAATGAACCTGTGGAATCTTCT ACACACTCTCCTGGTGGAAAACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGGTGATAGGGAACCCAGACTAGTTCCTGAGTGTGTAA TTGCATTGGATAATGAAAACATTTGTCGAGTGGCTTGTGGTGATACTCTTACAGTTGCTTTGACAACCTCAGGATATGTGTATACAATGGGCAGTGCAGC TTACGGACAACTTGGCTGTCCTGCGGCTGATGGGAAAGTCCCTACACGTGTGGAAGATATTATCGTTGACAGTTTTGTTGAAGATATTGCTTGTGGTTCT TATCATGTTGCAGTCCTGACTTCCAAGACAGAGATTTACACATGGGGGAAGGGTTTGAATGGGCAATTAGGTCACGGAGACAATGATCACCGGAATAAAC CCACACTAGTTGAGTTTTTAAAAGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTCACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTGT TGACCATTCTGTGTGTTCTGGATGTCGTAATCCTTTTGGATTCAGAAGAAAACGGCATAATTGTTATAACTGTGGTCTTGTCTTTTGCAAAGCATGCACT AGCAGGAAATCAATGAAAGCTGCCCTTGCTCCTAATTCCAACAAGCTGTATCGGGTTTGTGATGACTGCTATTCTAAACTTAAGAAATCTGCAGACTCAG TTTCCTCGCGCCAAAGTGTTAGTTTGAGAAGTGCAAGTGTGCAAGATGGTAAGGTCAGTAAATTACAAGGATCCTTATTAAGGCTTTCATCTTTCGGTTC TATTACTCAAGCAGAGAGCAGTCACTCAAAGCTTCCTGAATCACATGATAGTCATCTCTTTCCATCTTTGAATGGAAAACTACAAGTGGGGGGTTTTGCT CCTTCAAAATCATCAAATTCTGTTTCCGAAGAATCCAGGAAACTCCTTTCAGTTTCCGTGCCTGCGCCAATAATATCTTGCCATCCATCATCTCCAGGTT CTTCAAAGTCAAGCCCACGAAAATCTTGTGAAGATATCAATGATGATTCAAAGCAAAGAAATGAAATTCTAAGTCAAGAAGTTATAACTTTAAGGGCACA GGTTGAAGATCTTAGTTGCAAGTCAAAAAGTCTTGAAGCTGAGCTTGAGAGAACATCAAAGCAATTGAAGGAAGTGAGTGCAGTAGCTGCAGATGAAGCT GCAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGACTTCCCAGTTGAAGGAAATGGTGCAAAGACGACCAGGACTTAATGCTGACCCAAGCACAG ATTTCAACGCTGAAACCGCAAAAAATAACGTAAATGACGAGAGCCATATAACAAACAATATCACTCCCATAAATGAGTGCAGCAGCAATGCATCATCAAA TCGGATATCGACTAATGGTACCAAAACACAAAGTGGAAAAGCAGAGTGGGTTGTTCAAGATGAGGCAGGTGTATACATAAGTTTGTCCTCCCTGCCAAGT GGTGGTAATGAACTTAAGCGTGTTCGCTTCAGTCGGAAGCATTTCACAGAAGAAGAAGCTGAGAACTGGTGGGCTGAAAACGGAGTCCGGGTATTGGAGC GACACAATGTAGTTGCTTCATAGGATTGAAGAGTACACTGCCTTGACGCACAAGTCAACCATTTTCTGTAAACCTCCGGAAACAGTAAATTATTTTACCT CCGCCCTCCGGAATCTTTTGTCTAAATAGAGAGGTAGAATACCAAATTGGGGAAGGGATGGGGACAGAGGAAGAAAACTTATTACTCTCCTGAAAAGTGC CACTTTATAAAGAATCTTTTATGTACTCATTTCTGAGTGTGGTGCATTTCAGCTTAGTCATTTTCTTTTCCTTTCCATTTTTTGTATAACTGTGCGAATG TGTGTTATTTTTCACTTGCAGCTGAGGGTTATATATTGGTAACTAAAACTATGGAGTAGCCAAAAACTAACATATATTCTTTGTGGAGGATATAACATAT TAACTTACAT
• Tissue: pods
• Gene name: LI_gene_179629;
• Additional information: details;

Expression of Ll_transcript_379808

FPKM

• PAB: 0.1
• PNAB: 1.3
• PS1: 1.2
• PS2: 1.3
• PS3: 1.3
• PW1: 0.4
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_379808

• Blastp: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 51.03% of identity
• Blastx: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 45.92% of identity
• Eggnog: regulator of chromosome condensation(COG5184)
• Kegg: Link to kegg annotations (AT1G76950)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421757.1)
• Pfam: Regulator of chromosome condensation (RCC1) repeat (PF13540.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;