Ll_transcript_379815

• Id Trinity: TRINITY_DN50753_c1_g2_i7
• Name Transcript: Ll_transcript_379815
• Sequence: GTTTTGTATTCAGGACGAGTCTCTACTCATATGGTTCCATGGGAAAGAGGAGAAACAACTTAAGCTCAGTACTGTTTCAATGATCATTCCTGGGCAGCGG ACTATATGTAAAGACAAGGATGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGATGTAACAATCACAGGCGAGGAAATGAAGCAAGAT TTGCAAGTGTGTTATCTGACAGTCCACAAATTTCCCCACAGAGATATACTCCATCAGTTAAACCAGTTGACCCAGGAGATACCATCGGGTTTTCATTTGA CAATTCGTCACATAATACACCAGGAAAACCTTTTTCTGAAACAATTTCATATACTGCAGCTGGAAAGAGTTCCAGTCAAGCTGAATCAATTGCAAATGCG TCTTTACCTCCAGGGTCAGTCAATAACTCAAATCTAAATTCTTCACCTGAGCCATTTCGAGAAAGTGTATCTAGTGCTGTAAGTTCATTGACTTCATTGA GCCAGGGTTCTTACCAGGAAGATTTTGATGCTTTAAGTGATGTTTACATTTGGGGAGAAGATATTGGCAACGGAGTGCTTGGTGGTGGTGTGCATAGAGT TGAATCCTTATCTAATTCTGAGATGGATGCATTAATCCCCAAGGCACTGAAATCAAAAGTAGTTCTGGATGTCTACAGTATTGCTTGTGGTTCCAAGCAT GCAGTTGTAGTTACTAAGCAAGGAGAGATATTTAGTTGGGGGTATGAATCAGGAGGTAGGCTTGGGCTGGGTGTAGAAGCAGATGTTTCTCACCCTAAGC CCATTGACACTCTTAGCAGTGTGAATATTGAAGTAGTAGCATGTGGGGATTATCATACTTGTGCTATTACATTTGCTGGGGATCTTTACACTTGGGGTGA TGGTACTCACAATTCTGGTTTGCTTGGGAATGGAAATGAAGTCAGTCACTGGATCCCGAAGAAAGTAAGTGGTGATATGGAGGGTGTACAGATATCATTT GTTTCCTGTGGACCTTGGCATACAGCTATTGTTACATCAGCTGGCAAGTTGTTTACATTTGGGGATGGATCTTTTGGTGCCTTGGGTCATGGAGATACTA GTAGCACAAATATTCCTCGGGAAGTAGAGACTTTGAAGGGGTTGAGAACAACCAAGGTTTCCTGTGGTGTTTGGCACACTGCTGCGGTTGTTGAGATGAT AAATGAACCTGTGGAATCTTCTACACACTCTCCTGGTGGAAAACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGGTGATAGGGAACCC AGACTAGTTCCTGAGTGTGTAATTGCATTGGATAATGAAAACATTTGTCGAGTGGCTTGTGGTGATACTCTTACAGTTGCTTTGACAACCTCAGGATATG TGTATACAATGGGCAGTGCAGCTTACGGACAACTTGGCTGTCCTGCGGCTGATGGGAAAGTCCCTACACGTGTGGAAGATATTATCGTTGACAGTTTTGT TGAAGATATTGCTTGTGGTTCTTATCATGTTGCAGTCCTGACTTCCAAGACAGAGATTTACACATGGGGGAAGGGTTTGAATGGGCAATTAGGTCACGGA GACAATGATCACCGGAATAAACCCACACTAGTTGAGTTTTTAAAAGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTCACTGCTGTTGTATGTC TTCATAAATGGATACCAAGTGTTGACCATTCTGTGTGTTCTGGATGTCGTAATCCTTTTGGATTCAGAAGAAAACGGCATAATTGTTATAACTGTGGTCT TGTCTTTTGCAAAGCATGCACTAGCAGGAAATCAATGAAAGCTGCCCTTGCTCCTAATTCCAACAAGCTGTATCGGGTTTGTGATGACTGCTATTCTAAA CTTAAGAAATCTGCAGACTCAGTTTCCTCGCGCCAAAGTGTTAGTTTGAGAAGTGCAAGTGTGCAAGATGGTAAGGTCAGTAAATTACAAGGATCCTTAT TAAGGCTTTCATCTTTCGGTTCTATTACTCAAGCAGAGAGCAGTCACTCAAAGCTTCCTGAATCACATGATAGTCATCTCTTTCCATCTTTGAATGGAAA ACTACAAGTGGGGGGTTTTGCTCCTTCAAAATCATCAAATTCTGTTTCCGAAGAATCCAGGAAACTCCTTTCAGTTTCCGTGCCTGCGCCAATAATATCT TGCCATCCATCATCTCCAGGTTCTTCAAAGTCAAGCCCACGAAAATCTTGTGAAGATATCAATGATGATTCAAAGCAAAGAAATGAAATTCTAAGTCAAG AAGTTATAACTTTAAGGGCACAGGTTGAAGATCTTAGTTGCAAGTCAAAAAGTCTTGAAGCTGAGCTTGAGAGAACATCAAAGCAATTGAAGGAAGTGAG TGCAGTAGCTGCAGATGAAGCTGCAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGACTTCCCAGTTGAAGGAAATGGTGCAAAGACGACCAGGA CTTAATGCTGACCCAAGCACAGATTTCAACGCTGAAACCGCAAAAAATAACGTAAATGACGAGAGCCATATAACAAACAATATCACTCCCATAAATGAGT GCAGCAGCAATGCATCATCAAATCGGATATCGACTAATGGTACCAAAACACAAAGTGGAAAAGCAGAGTGGGTTGTTCAAGATGAGGCAGGTGTATACAT AAGTTTGTCCTCCCTGCCAAGTGGTGGTAATGAACTTAAGCGTGTTCGCTTCAGTCGGAAGCATTTCACAGAAGAAGAAGCTGAGAACTGGTGGGCTGAA AACGGAGTCCGGGTATTGGAGCGACACAATGTAGTTGCTTCATAGGATTGAAGAGTACACTGCCTTGACGCACAAGTCAACCATTTTCTGTAAACCTCCG GAAACAGTAAATTATTTTACCTCCGCCCTCCGGAATCTTTTGTCTAAATAGAGAGGTAGAATACCAAATTGGGGAAGGGATGGGGACAGAGGAAGAAAAC TTATTACTCTCCTGAAAAGTGCCACTTTATAAAGAATCTTTTATGTACTCATTTCTGAGTGTGGTGCATTTCAGCTTAGTCATTTTCTTTTCCTTTCCAT TTTTTGTATAACTGTGCGAATGTGTGTTATTTTTCACTTGCAGCTGAGGGTTATATATTGGTAACTAAAACTATGGAGTAGCCAAAAACTAACATATATT CTTTGTGGAGGATATAACATATTAACTTACAT
• Tissue: pods
• Gene name: LI_gene_179629;
• Additional information: details;

Expression of Ll_transcript_379815

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0
• PS2: 0.2
• PS3: 0.2
• PW1: 0.6
• PW2: 0.3
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_379815

• Blastp: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 45.75% of identity
• Blastx: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 44.93% of identity
• Eggnog: regulator of chromosome condensation(COG5184)
• Kegg: Link to kegg annotations (AT1G76950)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421756.1)
• Pfam: Regulator of chromosome condensation (RCC1) repeat (PF13540.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;