Ll_transcript_378050

• Id Trinity: TRINITY_DN50754_c0_g1_i1
• Name Transcript: Ll_transcript_378050
• Sequence: ATATACTCTAAACAAATAGAAGATATAATTATCATGATATGGGATAATCTCTATATTCTGAGTATCCTCTAGATAAGATTAAGATATTCTGAGATACTTT CATATATTTTAAGAACCCTTACTTCACTAGAGCTACTATCTTGCTTCATTCTTATTCTTTTGAAACTTTTTATAATAGCAAATGACCTTAAATTAGCATA GAACTAACTCTATTTTGGCAGGTTTTTCATTTCCTATATACATATGCTATAGTTGTTGATACATGCCCCTTCACTCTTGACGAGTTTGTTCAAGCATTTC ATGATAAGTGCTCAATGTTACTTGGAAAGATTCACGTGGCCCTTCTTACAGTTCTTCTATCTGACATTGAAATGGAGCTTACTAATGGGTTTTCATCTCA TTTAAATAAGTCATGCAACTTTCTTGCACTGGTTCACTCGGTCGAAAGTCAAGAATATTCCTTGAATTTCTGGAGAAAATCTCTTAATTCTCTTACTTGG ATTGAAATACTCCGTCAAGTGCTAGTTGCTTCTGGATTTGGTGCAAAGCAAGGTGCTTTACAGAGGGAAACCCTTAGCAAGGAACTGAATCTTTTTGTAA ACTATGGCATACGTCCTGCAACCTTGAAGGGCGAGTTGTTTAAAATCTTGTTAGAGCGAGGAAACAGTGGATGCAAAGTATCCGAGCTAGCAAAGTCAAT GCAGATTGCAGAATTAAACCTTGTCAGAACAACAGATGAGCTGGAATCGTTAATATGCTCGACACTTTCTAGTGACGTTACTTTATTTGAAAAGATCTCA TCATCAGCGTATCGGTTGCGAATGAGCACTGTTACAAAGGAGAATGGTGAATTGGAGTCAGATATGGAGGACTCTGGGAGTGTTGATGATGAACTCAATG AAAGTGATACATGTAGCAGCGATGATGATTTTGAAAGTGATTTAAGAATCACCAATATAAGAAAATTTAAGCGTGCAAACAGTCACAAAATTATAAACAA TATGCTGAAAGTGTACACTGAAATTGATGAGAGCCATCCAGGGGAAGTGTGGTTGTTAGGACTTATGGAAAGCGAGTATTCAGATTTGAACATTGAAGAA AAATTGAATGCATTGGTGGCTCTAACTGATCTTCTTTCATCTGGATCCAGCATCAGCATGAAGGATACAATGAAAGTTACAGCTGATCACAGTTCTAGCA TCCAGTTACGTGGTTCAGGAGCAAAAATAAAGAGATCAGTAGTAAAGAACCCCAGGCCAGTTTCGAACCAGACCGCACAAATGCAATGTGCTAAAGAAAC AGATTCTATTTTTCATCCCAATCCAGTAGATTCCTCATCATTAACATTAATCTCAAATGCCCATAGCCATGAGGGTTCCTCTAAGGGAATATATTCAACT GGTTCACACCCCACCCAATCAGTGTTTTTGGGATCTGATCGTAGGTACAATAGATACTGGCTTTTTTTGGGCCCTTGTAATGCAGATGATCCTGGCCATA GGAGGGTTTACTTTGAATCTTCCGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCCTTGTGTGCCTTGGTATCAGTTCTAGATGATAGGGGGAA ACGGGAGGCTCTTCTTATTGAATCTTTGGAGAGACGACAAGCATCTCTATGCAGATCTATGTCTAGGATTAAGGTTAATAGCACTGGAATGAGGTGTATG TCACATTCTGATCAATCTGAGCTGGATATGGTCACAGAAGACAGTTACTCTCCTATATCTGATGTAGACAATCTGAACGTGACTGAGACTGCTGAAGACT CTTTGCCTTCAGCTGGGGCTGTGGTAATTGCAGCTGGAAAGAAGGGAGAGGAAAAGGTGCAAAAATGGCTCTGCATGCAAGAATATGATTCTTGGATTTG GAGTTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCGTATCTTGACTCTCTAGCGAGATGTAGGAGTTGTCACGATCTATACTGGAGA GACGAGAGACACTGCAAAATTTGCCATATGACATTTGAACTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGGGAGAAAGAAG ACAGCAATATATTTCCAAATCATAAAGTATTGTCATCACAGATTCAATCACTGAAAGCTGCAATTTATGATATTGAGTCTGTTATGCCTGAAGATGCCCT GGTGGGTGCTTGGAGGAAGTCTGCTCA
• Tissue: pods
• Gene name: LI_gene_179638;
• Additional information: details;

Expression of Ll_transcript_378050

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.3
• PS2: 0.1
• PS3: 0.1
• PW1: 0
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_378050

• Blastp: Homeobox-DDT domain protein RLT3 from Arabidopsis with 53.74% of identity
• Blastx: Homeobox-DDT domain protein RLT3 from Arabidopsis with 54.14% of identity
• Eggnog: NA(ENOG410YDFQ)
• Kegg: Link to kegg annotations (AT4G12750)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019446445.1)
• Pfam: WSTF, HB1, Itc1p, MBD9 motif 1 (PF15612.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;