Ll_transcript_378055

• Id Trinity: TRINITY_DN50754_c0_g1_i5
• Name Transcript: Ll_transcript_378055
• Sequence: CCATATTTCATTACCTTAAAACCCAAAACCCTATTTCTAATACTCTCTCATATTATCCTCTGCTTCATTTCTCATTCCATTTCATGCACAAACACCTCAC TAATTCAGAGTTTGATGGATGCTTAGCACTCGAAGTCGGTTATGGAGAGAGGAAACGGAACAACGTGTAAGCAATTTCCATCTCATGGCGGAAAAAGCTT AGTGACAGTTGCTGCTATTAGGAAGAAGCATTTACAGAAAGAAATTAACGTTGTTAATGCAACTTCTTCATATTCTGTGAAGAGTAAAAAACGTAACGGT TTTCAGGAAGAGCTATTAGCTGAAGATTGCATTGCAAACAACGTTTTTCGTAGTGATGGTCCTGCTCTTGGTCACGATTTTGACTTTCTTCCTTCTGGGC CCAAAGATTACATGCCTGCTTGTCCAGAGAACCAAAGACCCACCAAAAGGAAGAAGGTTTACAACAGTGCAATTGTAAGTCATCCTGATTGTAATATGGA AGCACCTGTGAAGAAACATGGTGTTGGCAAGGGATTGATGACAGTCTGGATGGCAACAAATCCTGATGCTAGGAACCTTCCAATTGGATATGGTTTGGTC GACCAGGAAGTTCGTCCAACCTCAAATTCTATTCTACATAAACCAGTCTGTGATAAGAAGAGGTCTCGGAAAACAGTAACCACGAGCGGAATGCTAAAAA GTAAAATGCAGACTCAGAAAAATAAATTACAGGATAAGAGGAATTTTGCCATTCAAAGACGAGTGGGGGATTCTAATCAGTATGTGAGTGAGATCCAGCT ACCGAAGGAAAAATGTGATCTTGCTTTGGATAGTGCAACATCTGCGGAGAGAGTTGATCGAATTTCGATGCTAATCGATGATGAAGAGCTAGAGATTAGA GATTTACAAGCTGGGACTGACCTGCTTATGTGTTCTGAGCATCTTGCTACCAGTGGAATACTTGGCTGCTCACTTTGTAAAGATGTGCTAGTTAAATTTC CCCCAGATACTGTCAAGATGAAGAAACCTATCTGTTTGCAACCTTGGGACTCCTCTCCAGAAATTGTGAAGAAATTATTTAAGGTTTTTCATTTCCTATA TACATATGCTATAGTTGTTGATACATGCCCCTTCACTCTTGACGAGTTTGTTCAAGCATTTCATGATAAGTGCTCAATGTTACTTGGAAAGATTCACGTG GCCCTTCTTACAGTTCTTCTATCTGACATTGAAATGGAGCTTACTAATGGGTTTTCATCTCATTTAAATAAGTCATGCAACTTTCTTGCACTGGTTCACT CGGTCGAAAGTCAAGAATATTCCTTGAATTTCTGGAGAAAATCTCTTAATTCTCTTACTTGGATTGAAATACTCCGTCAAGTGCTAGTTGCTTCTGGATT TGGTGCAAAGCAAGGTGCTTTACAGAGGGAAACCCTTAGCAAGGAACTGAATCTTTTTGTAAACTATGGCATACGTCCTGCAACCTTGAAGGGCGAGTTG TTTAAAATCTTGTTAGAGCGAGGAAACAGTGGATGCAAAGTATCCGAGCTAGCAAAGTCAATGCAGATTGCAGAATTAAACCTTGTCAGAACAACAGATG AGCTGGAATCGTTAATATGCTCGACACTTTCTAGTGACGTTACTTTATTTGAAAAGATCTCATCATCAGCGTATCGGTTGCGAATGAGCACTGTTACAAA GGAGAATGGTGAATTGGAGTCAGATATGGAGGACTCTGGGAGTGTTGATGATGAACTCAATGAAAGTGATACATGTAGCAGCGATGATGATTTTGAAAGT GATTTAAGAATCACCAATATAAGAAAATTTAAGCGTGCAAACAGTCACAAAATTATAAACAATATGCTGAAAGTGTACACTGAAATTGATGAGAGCCATC CAGGGGAAGTGTGGTTGTTAGGACTTATGGAAAGCGAGTATTCAGATTTGAACATTGAAGAAAAATTGAATGCATTGGTGGCTCTAACTGATCTTCTTTC ATCTGGATCCAGCATCAGCATGAAGGATACAATGAAAGTTACAGCTGATCACAGTTCTAGCATCCAGTTACGTGGTTCAGGAGCAAAAATAAAGAGATCA GTAGTAAAGAACCCCAGGCCAGTTTCGAACCAGACCGCACAAATGCAATGTGCTAAAGAAACAGATTCTATTTTTCATCCCAATCCAGTAGATTCCTCAT CATTAACATTAATCTCAAATGCCCATAGCCATGAGGGTTCCTCTAAGGGAATATATTCAACTGGTTCACACCCCACCCAATCAGTGTTTTTGGGATCTGA TCGTAGGTACAATAGATACTGGCTTTTTTTGGGCCCTTGTAATGCAGATGATCCTGGCCATAGGAGGGTTTACTTTGAATCTTCCGAAGATGGTCACTGG GAGGTGATTGATACTGAAGAGGCCTTGTGTGCCTTGGTATCAGTTCTAGATGATAGGGGGAAACGGGAGGCTCTTCTTATTGAATCTTTGGAGAGACGAC AAGCATCTCTATGCAGATCTATGTCTAGGATTAAGGTTAATAGCACTGGAATGAGGTGTATGTCACATTCTGATCAATCTGAGCTGGATATGGTCACAGA AGACAGTTACTCTCCTATATCTGATGTAGACAATCTGAACGTGACTGAGACTGCTGAAGACTCTTTGCCTTCAGCTGGGGCTGTGGTAATTGCAGCTGGA AAGAAGGGAGAGGAAAAGGTGCAAAAATGGCTCTGCATGCAAGAATATGATTCTTGGATTTGGAGTTCCTTTTATTTAGATCTCAATGTTGTAAAATATG GTAGAAGGTCGTATCTTGACTCTCTAGCGAGATGTAGGAGTTGTCACGATCTATACTGGAGAGACGAGAGACACTGCAAAATTTGCCATATGACATTTGA ACTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGGGAGAAAGAAGACAGCAATATATTTCCAAATCATAAAGTATTGTCATCA CAGATTCAATCACTGAAAGCTGCAATTTATGATATTGAGTCTGTTATGCCTGAAGATGCCCTGGTGGGTGCTTGGAGGAAGTCTGCTCATAAGTTATGGG TCAAACGACTCAGACGCACCTCCACTTTAGTGGAGCTTTTTCAGGTTCTTACTGACTTTGTTGATGCCATCAATGAGGACTGGTTGTTTCAATGCCACTT TCCTGATGGCGTGGTTGAAGAAATCATTTCATCTTTTGCATCTATGCCTCATACATCATCTGCCCTTGCCCTGTGGTTGGTGAAGTTAGATATCATAATT GCTCCGTACCTGGACCGATTTCATCATCAGAAGAAGCATGGAATCAGTAAGAGCTAATGGCTTCCTAAGTACAAGAAATAAAAGTTATAATCACATGGTA AGCATGGTGTTTGCTGATCGGCGTACTTACTTCTATACAAGTAAAACACATTGGAATTGAAATTGTGGTACTACCCGTTCTGCACCTTGATTTGATCAGA GTAATATATGTTGGCTCCACTTGGTTCTCAAATCAGCGTGACTACAATTTGGCAGAGGCATTGCATGTCAAAATAAGTCATTTTCTTCCCATTTTTTCCT CTTAAAAGTTTGTATATACAGTTACTCCTGTTGATTATGTACAGCTTTAGATTAGATAAATAATGGGCAACTTGAGTTTTTTGGCGCGTAACCCCAGTTA GTTGCTATGAGGCCACCCTTATTTGTTGTTTTATGGTGTTTTCTTTATAGAAATCAATTTTGTCGTTGTATTTTGCAGAATGATGTCTGTACTGATGAAT AATAATTTGTGTTGAGGATTAGTGTTTCAGGCCATTTATCGAAAAAAATGATAGTGGTGTATAATTTTCAGTTTTGAACCGCTTTAGTTAAGATCCAAAG ATTCAAATGGTATTAATGTATTATGTAAG
• Tissue: pods
• Gene name: LI_gene_179638;
• Additional information: details;

Expression of Ll_transcript_378055

FPKM

• PAB: 0.1
• PNAB: 0.6
• PS1: 0.7
• PS2: 0.7
• PS3: 1.3
• PW1: 1.3
• PW2: 0.6
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_378055

• Blastp: Homeobox-DDT domain protein RLT3 from Arabidopsis with 49.47% of identity
• Blastx: Homeobox-DDT domain protein RLT3 from Arabidopsis with 49.47% of identity
• Eggnog: NA(ENOG410YDFQ)
• Kegg: Link to kegg annotations (AT4G12750)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019446445.1)
• Pfam: DDT domain (PF02791.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;