Id Trinity | TRINITY_DN50763_c2_g1_i1 |
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Name Transcript | Ll_transcript_378226 |
Sequence | AAAAAGCGTTGATATTAAAAACTATATAAGCCTTGATCTTATTTATCTAGTTTGGTAAAGTAGCGTAGACGACGAACCGAAACGAAATTTCCAACCTTCA TTCCAAAATTTTCATGTCCATCTTGCCCTCACAAACCCAAACAGCACCTTCATCTTCATCATCTTCATCTTCTTCAAACCCTAATTCCCAACATGGATTT TCAATCCCTTCTTCTTCCTCCATCCTCGACCTTCCTCTCGGATCCCTCCAGATCCACGATTCCCATATTCCAGGTCCATCAATTCCTGCTGCAGAAGATT CTGGTGGAACTTCCGAAAAGGTGACAGAATATGGGTCTCCAAGTGGTTTGGAGGCTTCATCTCAGCAAAACTCTAGAACACGTTCTAGGAGTCACTCAGG AAGACGAACGTCTGGATCATCTCAATCAGTGGGGAACACAACAGGAACAACTTCTTCTCAAAGAAGTCAACAGACTCTTGGGTCTGTAAATTCTCATGGA AACTCACCTTTGGCAGGAAGGAAGTCTCAGATGGTGAATGGTAATTACTTGCTGAATTTTCAATATGATCCAATATCTCGTTCTCAGCCAAGGGGTCCTC CTCCTCCTCCACCCAGAAGGCAGCGAAAGAGAAAACCATACAACAAAGATTTGTTTTTGCAGGCAAATTACAAATTCATGGTGCTAGATTCAGGAAATTA TTCAGCTGAGTCTATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACTTATTCGACCCCCCTTCCAATTCAGTGTCCAATTTGTTTG GAGTATCCCCTCTGTCCACAAATAACCTCGTGTGGACATATTTTCTGTTTCCCATGTATTCTACAATACCTATTATTGGGTGAAGAGGATAACAAAGGTG AATGCTGGAAAAGGTGTCCTTTATGCTTTGTGATGGTATCTGTCAAAGATTTATATACCGTACACATATCAAATGTCAAACAGTATCAAGTAGGAGATAA TATTGAGTTCACATTTTTAACTCGAAAAAAGGATTCATTTACTCTGTCCCATAAAAATAAACAAGAGACAGATACGACATCATGTGGCAATGAAGATTTT TGTGATCCCTTTTCTAAGTTTACACTCACATCAGATGTAGACCTTTCAGTGAGACATGCAATCTCAGATCTAGATGGTTGGCTGGCCAGGGCTGATTCAG GTCTTGTTGATGACCTAGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAATTAAAGCAGAGAAAGAAGTATTGGAACGAGCACAGAGCTTGTGACAG TGAAAAATCTTCTAGGCTTATTGATTATGGGCATCAGATACCATCAGCAGCTGTAAGTTTTATTGACACTGATGATGAAACCCATTCTAATGGATCAAGA ACTTCCTCTACAGATTTCCATGATCGAAGTAAGGGCATAATATTGGATAAACCAATTGCTGGGACCTCTCCGGATCAAATTTCGGATGTGGAGAAAGTTT TACCAGATCAGGAAATGAATTTATCTTCATATGAGGAGAAAAATAGTATCCGAAGGCTTTCAAATGGTAGTGGAGATGTTAAGGAAGGTGACTCATACAA TTTCTACCAGGTAATTGATGACAATTGGTTTGTGTTATGTTTTTCTACACCCGTCTTGCCTGATATTTTCCTAATTGGATAGAGCAATTGTGTCATCATA TGAACTATGCGCAATAATTTGACACTGTTTACACCAAAATGGGTATGAACTATATATAGAGAATTTAATGGAAATACGTGAAATAAGATGAAAGGATGAA AGGTTGTGCTATGTTTGAATGATTAAGAAGGGAGGAAACAGAGAAGTGTTATGTGTTAAATTCCAATATGACCCTTAGAGATGTTTCTCAAGAAGCTGAA TTATATTTTTCATTTTATTTTTTTGGACAAAATAAATGTATTAGGCTGAACACAAAGAAGGACAAGGGATGCTAATTGCAAAATAAAATGAATAGGGGAT AAAGAGAACTAAAAAAATCAATGAAGCAAAGCTATCCAATCTCTCAACATTTATGTAAGAAAAAAACCCTTTTAAGAAGACCATGGACTTTAAATAGTAA ATGGCAAGTTTTTAAAACAAAACAATACAATACATTATCCCTCATTATCCTTCAATTTTTAAGGGAACACAGAGAGAGAGTTGGAGGGATAGTGGCAGTC CCTTCCCTTTTCCATTGATCCTAACTAGGGATCTCGTTTTTTTCTATCCGCTTTGCTTTCATTCCTCATTACATCTCCTAACAAACTCTTGAGGAAAATC AGAATGAATATCTGATTAAGAAAGCAGGACGCAGCATGTTATTCAAAGAAGTAAAACATAGTACAATAGTACTTCTTCAGCATTCCATATTTTTCGTGCA TCTGCTCCCTTCCGTTGTAACTGATTTTCTTAATTTCTTGTACGCAATGGTTGTTTCAAAACATTACTATTATTTTAGGAGGAATTAGCTAAGTGTCAAG ATTTTGTTAAGGCTACACCAAATACTGTATTTGGATTATTGACCACTTAACCTGCATGACGGCTTTTAGTTATTTACCAAATTTTTAATCACAAGTGGAA AATTTGAGCTGATTCTATATTATATTATTATCTTTGTGCACCAACAGTTGGAAGAGGTTGAGGTACGTGCAATGTGCATTATTTTTCGGATTAAATGCAC ATTATGTCTTTATTATTATTGTTAGTGGCATTCTGAAGATGTAGTATTGTACTATGTTTTACTAAGATTGAATGGTTTACTTATGCTGCTGTCTTCCAAT TGTATCAGTGGATGCTGATAAATTTGTGGCTTGGTTATCCTCACTGACAACATGTTGCTTTTGAACTTGAATTACCCATTGGTTTTAAATCACGTCTATC TATTTTAAACTCATTTATGGATTAGTCCCTCATGATTGTTATATGGGATATGGGATGCTGCTTTTAATTTTATTGGACAAATCTTGAATTCTTGATGCTT AAAAAATTTCTAATTATTTCCCCTTTACTGTTGACTTTTGGTTGTTACAATGCTCATGTCTATTTCAGGCTTGTGATGGTCAGCATGTAATTCTTCATAC ATTGAACATGAAAGTTTTACTTCACCATTATGGGAGCTATGATAAGCTTCCACACAGGTTTGAACAAAATCAATTATATTTGTTCTGTGCACTTAGAAAG TAAATGGATACATGTGTGCTTATGTTTGAATTATATTATTGGCATAATGTGGAACTTCGATCTTTATGGGATATAAATTGAATTATCACGTGCCAATTTT GGATTTTGGTTTATGAACATATTTGCATGACACAACAAATCCTTTTAACTCCTGAAGTACTGTGCACATTCAGAATTAGGTCTGCTGTTGCTGAAAAATA GAATGTCAGACAAATTATTAAGATTTCACCACATGCTATTCTGGTTTATCAATATCTCATAACATATAAAAATTGAATTAAACATCTGCTATAGATTAAA ATGATAGCATTCAATTCAAATGAAGTTAGATCAACACATTATAGGATCATTCAAAAGAACCTTCCTTGAGAAGTTACAACACAAATCAAGGCATGTTTAG CTTTGATTAAATTTGGGAGAAAGTTGTTTTTTTTTTCCTAAAGTTCTATCAGTAAGATTTTGATTATAAGTTATTTTGAACACAAAAAAGAAGCTTATCC CCATCACAGTAATCCTTATTCCGCTAGGTGGGTTGGTTATATGGACCAATTGATGCAGTTGTATTCTATTGAACACCAAAATTTCAGGACATTATCTAAA TTTGTATTTATTTCATGAGAAATGTGAGTATCTAAATTAGTCCATGTACCCATGCTATTTAGCATATTTGTATCACTGTACTTATGGTTGGTGTCTTGAG TGAACAACATCTTTGAGAGGAGCATTAGTGAGCTTTAATTGGCTTTTTTATTAGAGTCTATTGATTGCAGAATAAGTGGAAGGATTCTGCAATTGGAGGC AGTTACTCAGTCCGAGGCCATGAGGAGGCGATATCGATTCATAAGCCATTTTCCGTTAACAACAACATTTCAGCTTTGTGAAATTGATTTGAGTGATATA CTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGAAGCGTGCAAATCAGAGGAAGCAGCTTGCAAAGAAGGAACTAAAGGAAAAAATCAAGG CTGAAGCTGCTTCTACTTATTCTGTTACCATACCAACAAGTTATCAGTTTGCTTCTCGTGATAATCCTCCTGTGTTCTCGATGGATGACTTTGGAGCTTT GGGAAATTCCGCTACGTCATCAAGTCCTCCAGTTGTCGGGGAGAGAAAATTGTTCTCAAATGTTACAAGGCTTGGCTTTGCTGCTGCTCATGATTCTCCT TCCCTTCAAATTCAAGAGACTGGAGGATCACATGATAACAATACAACCACTGGGTCTTCTAGTGCAACAGGTTTGAGAAATGTGGAGGCACCATCATATT CCAATGTTACATCCAGAGCAGAATCTAATATAAGCTTGAATGCACCGAAGACAAACGACGCAGGGAAGAGGGGAAAGAAACCAAATCGAGTTCTTCTCTC AACAGCTGGTGGCAGGCGCTATTGAAGACTCGGTCACAGTCTCTTGGTAAGATGACTCCCAACCTCACCCCACCCTATACCAAGCCAAATAAACAATTCC TACCTCTTTGAAGTGATTTCAGTGTGTAGTAATCAACCTTTAATAGATGATATGTGTGTACTTCATGCTCCTCTTATTAACAGGCAGACATGTGAAGAGA GAATAAATGTTTAAGTATACACAATCTCTGTCAATCCATGACAATTTAGGTTCAGTTGAATATTTACGTGGGTTTGTTGTTGACTACTTATTACGGTATG AGTAGAAATGAGTCGAGTCGAGTCAGACACTTGAAGTTCATACTTATCCATGCATGAGAAGATTAGGTAAATGAGTCGAGTCGAGTCAGACACTTGAAGT TCATACTTA BLAST |
Tissue | pods |
Gene name | LI_gene_179718; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_378226
Blastp | RING finger protein 10 from Xenopus with 40.11% of identity |
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Blastx | RING finger protein 10 from Xenopus with 37.78% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (734904) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019447408.1) |
Pfam | Zinc finger, C3HC4 type (RING finger) (PF00097.24) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |