| Id Trinity | TRINITY_DN50763_c2_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_378228 |
| Sequence | AAAAAGCGTTGATATTAAAAACTATATAAGCCTTGATCTTATTTATCTAGTTTGGTAAAGTAGCGTAGACGACGAACCGAAACGAAATTTCCAACCTTCA TTCCAAAATTTTCATGTCCATCTTGCCCTCACAAACCCAAACAGCACCTTCATCTTCATCATCTTCATCTTCTTCAAACCCTAATTCCCAACATGGATTT TCAATCCCTTCTTCTTCCTCCATCCTCGACCTTCCTCTCGGATCCCTCCAGATCCACGATTCCCATATTCCAGGTCCATCAATTCCTGCTGCAGAAGATT CTGGTGGAACTTCCGAAAAGGTGACAGAATATGGGTCTCCAAGTGGTTTGGAGGCTTCATCTCAGCAAAACTCTAGAACACGTTCTAGGAGTCACTCAGG AAGACGAACGTCTGGATCATCTCAATCAGTGGGGAACACAACAGGAACAACTTCTTCTCAAAGAAGTCAACAGACTCTTGGGTCTGTAAATTCTCATGGA AACTCACCTTTGGCAGGAAGGAAGTCTCAGATGGTGAATGGTAATTACTTGCTGAATTTTCAATATGATCCAATATCTCGTTCTCAGCCAAGGGGTCCTC CTCCTCCTCCACCCAGAAGGCAGCGAAAGAGAAAACCATACAACAAAGATTTGTTTTTGCAGGCAAATTACAAATTCATGGTGCTAGATTCAGGAAATTA TTCAGCTGAGTCTATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACTTATTCGACCCCCCTTCCAATTCAGTGTCCAATTTGTTTG GAGTATCCCCTCTGTCCACAAATAACCTCGTGTGGACATATTTTCTGTTTCCCATGTATTCTACAATACCTATTATTGGGTGAAGAGGATAACAAAGGTG AATGCTGGAAAAGGTGTCCTTTATGCTTTGTGATGGTATCTGTCAAAGATTTATATACCGTACACATATCAAATGTCAAACAGTATCAAGTAGGAGATAA TATTGAGTTCACATTTTTAACTCGAAAAAAGGATTCATTTACTCTGTCCCATAAAAATAAACAAGAGACAGATACGACATCATGTGGCAATGAAGATTTT TGTGATCCCTTTTCTAAGTTTACACTCACATCAGATGTAGACCTTTCAGTGAGACATGCAATCTCAGATCTAGATGGTTGGCTGGCCAGGGCTGATTCAG GTCTTGTTGATGACCTAGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAATTAAAGCAGAGAAAGAAGTATTGGAACGAGCACAGAGCTTGTGACAG TGAAAAATCTTCTAGGCTTATTGATTATGGGCATCAGATACCATCAGCAGCTGTAAGTTTTATTGACACTGATGATGAAACCCATTCTAATGGATCAAGA ACTTCCTCTACAGATTTCCATGATCGAAGTAAGGGCATAATATTGGATAAACCAATTGCTGGGACCTCTCCGGATCAAATTTCGGATGTGGAGAAAGTTT TACCAGATCAGGAAATGAATTTATCTTCATATGAGGAGAAAAATAGTATCCGAAGGCTTTCAAATGGTAGTGGAGATGTTAAGGAAGGTGACTCATACAA TTTCTACCAGGTAATTGATGACAATTGGTTTGTGTTATGTTTTTCTACACCCGTCTTGCCTGATATTTTCCTAATTGGATAGAGCAATTGTGTCATCATA TGAACTATGCGCAATAATTTGACACTGTTTACACCAAAATGGGTATGAACTATATATAGAGAATTTAATGGAAATACGTGAAATAAGATGAAAGGATGAA AGGTTGTGCTATGTTTGAATGATTAAGAAGGGAGGAAACAGAGAAGTGTTATGTGTTAAATTCCAATATGACCCTTAGAGATGTTTCTCAAGAAGCTGAA TTATATTTTTCATTTTATTTTTTTGGACAAAATAAATGTATTAGGCTGAACACAAAGAAGGACAAGGGATGCTAATTGCAAAATAAAATGAATAGGGGAT AAAGAGAACTAAAAAAATCAATGAAGCAAAGCTATCCAATCTCTCAACATTTATGTAAGAAAAAAACCCTTTTAAGAAGACCATGGACTTTAAATAGTAA ATGGCAAGTTTTTAAAACAAAACAATACAATACATTATCCCTCATTATCCTTCAATTTTTAAGGGAACACAGAGAGAGAGTTGGAGGGATAGTGGCAGTC CCTTCCCTTTTCCATTGATCCTAACTAGGGATCTCGTTTTTTTCTATCCGCTTTGCTTTCATTCCTCATTACATCTCCTAACAAACTCTTGAGGAAAATC AGAATGAATATCTGATTAAGAAAGCAGGACGCAGCATGTTATTCAAAGAAGTAAAACATAGTACAATAGTACTTCTTCAGCATTCCATATTTTTCGTGCA TCTGCTCCCTTCCGTTGTAACTGATTTTCTTAATTTCTTGTACGCAATGGTTGTTTCAAAACATTACTATTATTTTAGGAGGAATTAGCTAAGTGTCAAG ATTTTGTTAAGGCTACACCAAATACTGTATTTGGATTATTGACCACTTAACCTGCATGACGGCTTTTAGTTATTTACCAAATTTTTAATCACAAGTGGAA AATTTGAGCTGATTCTATATTATATTATTATCTTTGTGCACCAACAGTTGGAAGAGGTTGAGGTACGTGCAATGTGCATTATTTTTCGGATTAAATGCAC ATTATGTCTTTATTATTATTGTTAGTGGCATTCTGAAGATGTAGTATTGTACTATGTTTTACTAAGATTGAATGGTTTACTTATGCTGCTGTCTTCCAAT TGTATCAGTGGATGCTGATAAATTTGTGGCTTGGTTATCCTCACTGACAACATGTTGCTTTTGAACTTGAATTACCCATTGGTTTTAAATCACGTCTATC TATTTTAAACTCATTTATGGATTAGTCCCTCATGATTGTTATATGGGATATGGGATGCTGCTTTTAATTTTATTGGACAAATCTTGAATTCTTGATGCTT AAAAAATTTCTAATTATTTCCCCTTTACTGTTGACTTTTGGTTGTTACAATGCTCATGTCTATTTCAGGCTTGTGATGGTCAGCATGTAATTCTTCATAC ATTGAACATGAAAGTTTTACTTCACCATTATGGGAGCTATGATAAGCTTCCACACAGGTTTGAACAAAATCAATTATATTTGTTCTGTGCACTTAGAAAG TAAATGGATACATGTGTGCTTATGTTTGAATTATATTATTGGCATAATGTGGAACTTCGATCTTTATGGGATATAAATTGAATTATCACGTGCCAATTTT GGATTTTGGTTTATGAACATATTTGCATGACACAACAAATCCTTTTAACTCCTGAAGTACTGTGCACATTCAGAATTAGGTCTGCTGTTGCTGAAAAATA GAATGTCAGACAAATTATTAAGATTTCACCACATGCTATTCTGGTTTATCAATATCTCATAACATATAAAAATTGAATTAAACATCTGCTATAGATTAAA ATGATAGCATTCAATTCAAATGAAGTTAGATCAACACATTATAGGATCATTCAAAAGAACCTTCCTTGAGAAGTTACAACACAAATCAAGGCATGTTTAG CTTTGATTAAATTTGGGAGAAAGTTGTTTTTTTTTTCCTAAAGTTCTATCAGTAAGATTTTGATTATAAGTTATTTTGAACACAAAAAAGAAGCTTATCC CCATCACAGTAATCCTTATTCCGCTAGGTGGGTTGGTTATATGGACCAATTGATGCAGTTGTATTCTATTGAACACCAAAATTTCAGGACATTATCTAAA TTTGTATTTATTTCATGAGAAATGTGAGTATCTAAATTAGTCCATGTACCCATGCTATTTAGCATATTTGTATCACTGTACTTATGGTTGGTGTCTTGAG TGAACAACATCTTTGAGAGGAGCATTAGTGAGCTTTAATTGGCTTTTTTATTAGAGTCTATTGATTGCAGAATAAGTGGAAGGATTCTGCAATTGGAGGC AGTTACTCAGTCCGAGGCCATGAGGAGGCGATATCGATTCATAAGCCATTTTCCGTTAACAACAACATTTCAGCTTTGTGAAATTGATTTGAGTGATATA CTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGAAGCGTGCAAATCAGAGGAAGCAGCTTGCAAAGAAGGTATCCTTGTACCTAACATATT ATGCATGTAGATTAGGGCGTCTGATAAGATTGAGTGGCCCAATCCATGAATCACTTTTTACACCCTTAATGCTTCTACAAAAGAATATGTTCTAGTTGTA GAGTGAAATTCTCAGGAAGATATCTTTATGAATATCTTTTTCAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_179718; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_378228
| Blastp | RING finger protein 10 from Xenopus with 40.11% of identity |
|---|---|
| Blastx | RING finger protein 10 from Xenopus with 37.78% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (734904) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019447408.1) |
| Pfam | Zinc finger, C3HC4 type (RING finger) (PF00097.24) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |